View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8432_low_3 (Length: 331)
Name: NF8432_low_3
Description: NF8432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8432_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 24 - 314
Target Start/End: Original strand, 40723959 - 40724249
Alignment:
| Q |
24 |
ttgggacgattagtagcacccatgacaataacatgagcacgagattttagcccatccataagagtcagaagttgtgacacaatccttctttcaacttcac |
123 |
Q |
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| T |
40723959 |
ttggggcgattagtggcccccatgacaataacatgagcacgggattttagcccatccataagagtcagaagttgtgaaacaatccttctttctacttcac |
40724058 |
T |
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| Q |
124 |
cgtttgtcttctcccgcttgggtgcaatagaatcaatttcatcaataaagatgatggatggtgcattcttttctgcttcttcaaatgctttcctaagatt |
223 |
Q |
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| T |
40724059 |
catttgtcttgtcccgcttgggtgcaatagaatcaatttcatcaataaagatgatggatggtgcattcttttctgcttcttcaaacgctttcctaagatt |
40724158 |
T |
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| Q |
224 |
gctttcactctctccagccattttggacataatctctggtccattaatacaaaagaagaaagctccagtttcattagcaactgctcttgct |
314 |
Q |
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| T |
40724159 |
gctttcactctctccagccagtttggacataatctctggtccattaatacaaaagaagaaagctccagtttcattagcaacagctcttgct |
40724249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 65 - 314
Target Start/End: Complemental strand, 40666067 - 40665817
Alignment:
| Q |
65 |
agattttagcccatccataagagtcagaagttgtgacacaatccttctttcaacttcaccgtttgtcttctcccgcttgggtgcaatagaatcaatttca |
164 |
Q |
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| T |
40666067 |
agattctagcccatccataagagtcagaagttgtgagacaatccttctttcaacttcaccgtttgtcttctcccgcttgggtgcaatagaatcaatttca |
40665968 |
T |
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| Q |
165 |
tcaa-taaagatgatggatggtgcattcttttctgcttcttcaaatgctttcctaagattgctttcactctctccagccattttggacataatctctggt |
263 |
Q |
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| T |
40665967 |
tcaaataaagatgatggatggtgcattcttttctgcttcttcaaacgctttcctaagattgctttcactctctccagccagtttggacataatctctggt |
40665868 |
T |
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| Q |
264 |
ccattaatacaaaagaagaaagctccagtttcattagcaactgctcttgct |
314 |
Q |
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| T |
40665867 |
ccattaatacaaaagaagaaagctccagtttcattagcaatagctcttgct |
40665817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 42 - 307
Target Start/End: Original strand, 41092804 - 41093069
Alignment:
| Q |
42 |
cccatgacaataacatgagcacgagattttagcccatccataagagtcagaagttgtgacacaatccttctttcaacttcaccgtttgtcttctcccgct |
141 |
Q |
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| T |
41092804 |
cccataacaattacatgtgcacgtgatttaagaccatccataagggtcaagagttgggagacaatcctcctctctacttcaccgtgagttttctctcgct |
41092903 |
T |
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| Q |
142 |
tgggtgcaatagaatcaatttcatcaataaagatgatggatggtgcattcttttctgcttcttcaaatgctttcctaagattgctttcactctctccagc |
241 |
Q |
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| T |
41092904 |
taggagctatggaatctatctcatcaataaagatgatggaaggtgcattcttctcagcttcctcaaatgccttccttagattgctttcactctcaccagc |
41093003 |
T |
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| Q |
242 |
cattttggacataatctctggtccattaatacaaaagaagaaagctccagtttcattagcaactgc |
307 |
Q |
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| T |
41093004 |
aagtttcgacattatctcagggccattaatgcagaaaaagaaggcacctgtttcatttgcaactgc |
41093069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 24 - 309
Target Start/End: Complemental strand, 27977518 - 27977233
Alignment:
| Q |
24 |
ttgggacgattagtagcacccatgacaataacatgagcacgagattttagcccatccataagagtcagaagttgtgacacaatccttctttcaacttcac |
123 |
Q |
| |
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||||||||||| || || ||||| ||||| ||||| ||||| ||||| ||||||||||| || |||| || || || ||||| |||| |||||||||| |
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| T |
27977518 |
ttgggacgatttgttgctcccataacaattacatgtgcacgggatttaagcccatccatgagggtcaagagctgggaaacaattcttcgctcaacttcac |
27977419 |
T |
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| Q |
124 |
cgtttgtcttctcccgcttgggtgcaatagaatcaatttcatcaataaagatgatggatggtgcattcttttctgcttcttcaaatgctttcctaagatt |
223 |
Q |
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| T |
27977418 |
cattagtcttctccctctttggagcaatggagtctatctcatcaatgaagatgattgagggtgcattcttctcagcttcttcgaatgccttcctcagatt |
27977319 |
T |
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| Q |
224 |
gctttcactctctccagccattttggacataatctctggtccattaatacaaaagaagaaagctccagtttcattagcaactgctc |
309 |
Q |
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| T |
27977318 |
actttcactctcaccagccagctttgacatgatctcaggaccattgatacagaaaaagaaagcaccagtttcatttgcaacagctc |
27977233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 186
Target Start/End: Complemental strand, 15690360 - 15690253
Alignment:
| Q |
77 |
atccataagagtcagaagttgtgacacaatccttctttcaacttcaccgtttgtcttctcccgcttgggtgcaatagaatcaatttcatcaataaagatg |
176 |
Q |
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|||||||||| ||| | |||||| ||||||||||| ||||||||| | ||||||||| | |||||| || ||||||||| |||||||||||||| | |
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| T |
15690360 |
atccataagattcaagacttgtgaaacaatccttctatcaacttcatcacgtgtcttctctc--ttgggtacagtagaatcaaattcatcaataaagaag |
15690263 |
T |
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| Q |
177 |
atggatggtg |
186 |
Q |
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| T |
15690262 |
atgaatggtg |
15690253 |
T |
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