View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8432_low_4 (Length: 298)
Name: NF8432_low_4
Description: NF8432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8432_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 19 - 290
Target Start/End: Original strand, 40397585 - 40397859
Alignment:
| Q |
19 |
ttacagaggtaaagacaacataagaaaaagactccatgtacattttagtacctattttcaatcaatgagaaataacaagcaaacaacatgtatatgagga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40397585 |
ttacagaggtaaagacaacataagaaaaagactccatgtacattttagtacctattttcaatcaatgagaaataacaagcaaacaacatgtatatgagga |
40397684 |
T |
|
| Q |
119 |
caaagtcttattcctttaagtttggcaccaatatcctcaatcaactaggtactaaatcaaaacaagttagttcatgctagcaccaatctcctcaatcaat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40397685 |
caaagtcttattcctttaagtttggcaccaatatcctcaatcaactaggtactaaatcaaaacaagttagttcatgctagcaccaatctcctcaatcaat |
40397784 |
T |
|
| Q |
219 |
t---cacctttctcctttagcacctttcttgtaaattaccatcttacaccaaaaacctttctcctttaacaccaa |
290 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
40397785 |
tcaacacctttctcctttagcacctttcttgtaaattaccatcttataacaaaaacctttctcctttaacaccaa |
40397859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 184
Target Start/End: Original strand, 44186873 - 44186978
Alignment:
| Q |
78 |
aatcaatgagaaataacaagcaaacaacatgtatatgaggacaaagtcttattcctttaagtttggcaccaatatcctcaatcaactaggtactaaatca |
177 |
Q |
| |
|
||||||||||||||||||||| ||||||| | || ||| |||||||| |||||||||| |||| ||||||||||||||| || | | |||||| | || |
|
|
| T |
44186873 |
aatcaatgagaaataacaagctaacaacaagcatctgaa-acaaagtcctattcctttatgtttaacaccaatatcctcaaacacccatgtactagaaca |
44186971 |
T |
|
| Q |
178 |
aaacaag |
184 |
Q |
| |
|
||||||| |
|
|
| T |
44186972 |
aaacaag |
44186978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 44186170 - 44186223
Alignment:
| Q |
54 |
atgtacattttagtacctattttcaatcaatgagaaataacaagcaaacaacat |
107 |
Q |
| |
|
||||| |||||||||||||||| |||| ||||| | ||||||||| |||||||| |
|
|
| T |
44186170 |
atgtatattttagtacctatttccaatgaatgatagataacaagctaacaacat |
44186223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 19162649 - 19162705
Alignment:
| Q |
51 |
tccatgtacattttagtacctattttcaatcaatgagaaataacaagcaaacaacat |
107 |
Q |
| |
|
|||||||| ||||||||||||| | |||||||||| | ||||||||| |||||||| |
|
|
| T |
19162649 |
tccatgtatattttagtacctacgtccaatcaatgatagataacaagctaacaacat |
19162705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University