View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8432_low_5 (Length: 251)
Name: NF8432_low_5
Description: NF8432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8432_low_5 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 46 - 233
Target Start/End: Original strand, 14567636 - 14567823
Alignment:
| Q |
46 |
attgtacatgctacaataagtgcttcatacatatgggatcattgtcaggtgcttacacttacacaaaatatgagattgaaacaaggttcaaatgctgagg |
145 |
Q |
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| T |
14567636 |
attgtacatgctacaataagtgcttcatacatatgggatcattgtcaggtgcttacacttacacaaaatatgagattgaaacaaggttcaaatgctgagg |
14567735 |
T |
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| Q |
146 |
ataataaggaaattgaagaattttctaactggctattaagtgtaggtgaaggcaagatatctgaacctaatgacgattatgcagatat |
233 |
Q |
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| T |
14567736 |
ataataaggaaattgaagaattttctaactggctattaagtgtaggtgaaggcaagatatctgaagctaatgacgattatgcagatat |
14567823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 14564330 - 14564380
Alignment:
| Q |
1 |
tttagacaaatactgccagttattccaagaggagatagatctgatattgta |
51 |
Q |
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| T |
14564330 |
tttagacaaatactgccagttattccaagaggagatagatctgatattgta |
14564380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 19775424 - 19775507
Alignment:
| Q |
1 |
tttagacaaatactgccagttattccaagaggagatagatctgatattgtacatgctacaataagtgcttcatacatatgggat |
84 |
Q |
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| T |
19775424 |
tttagacaaatactgccagttattccaagaggagatagatatgatattgtacatgctacaataagtgcttcatacatatgggat |
19775507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 150070 - 149844
Alignment:
| Q |
1 |
tttagacaaatactgccagttattccaagaggagatagatctgatattgtacatgctacaataagtgcttcatacatatgggatcattgtcaggtgctta |
100 |
Q |
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| T |
150070 |
tttagacaaattcttccggttgttccaagaggaaatagatcagatattgtgcatgcttccatcagtgcctcatatatatgggatcattgtcaagttctca |
149971 |
T |
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| Q |
101 |
cacttacacaaaatatgagattgaaacaaggttcaaatgctgaggataataaggaaattgaagaattttctaactggctattaagtgtaggtgaaggcaa |
200 |
Q |
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| T |
149970 |
ctttgacacagaacatgagattaaaacaaggttctaatcctgaagaaaatttgcagatttcagaattttcaaattggctattaatggtaggtgaagggaa |
149871 |
T |
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| Q |
201 |
gatatctgaacctaatgacgattatgc |
227 |
Q |
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| T |
149870 |
aattgcagaacctaatgacggttatgc |
149844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 123378 - 123287
Alignment:
| Q |
1 |
tttagacaaatactgccagttattccaagaggagatagatctgatattgtacatgctacaataagtgcttcatacatatgggatcattgtca |
92 |
Q |
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| T |
123378 |
tttagacaaatcctacctgttattccaagaggtgaccgatctgacattgtacatacttcaataaatgcttcttacatatgggatcattgtca |
123287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 22070838 - 22070729
Alignment:
| Q |
16 |
ccagttattccaagaggagatagatctgatattgtacatgctacaataagtgcttcatacatatgggatcattgtcaggtgcttacacttacacaaaata |
115 |
Q |
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| T |
22070838 |
ccagttatacctagaggtgatcggtctgatattgtacatgcctcaatcaatgcttcatacatttgggattactgtcaagttcttgaattgacaaataata |
22070739 |
T |
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| Q |
116 |
tgagattgaa |
125 |
Q |
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| T |
22070738 |
tgagattgaa |
22070729 |
T |
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