View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8433_high_11 (Length: 239)
Name: NF8433_high_11
Description: NF8433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8433_high_11 |
 | |
|
| [»] scaffold0006 (1 HSPs) |
| | |
|
| [»] scaffold0191 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 6888232 - 6888009
Alignment:
| Q |
1 |
accgaaccgcccgttacgacggtggcaaaaggccgatacaaccataaaactctgttacgaatgcgacacaccattgcggaagtgaaaaacacaacaccgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6888232 |
accgaaccgcccgttacgacggtggcaaaaagccaatacagccataaaactctgttacgaatgcgacacaccattgcggaagtgaaaaacacaacaccgt |
6888133 |
T |
|
| Q |
101 |
tcataaggaaaaatagataatgagagactgtgatgagccaataatatctcatattgctctcatcgcctattttcgtattgtatagtgttgtaatgttgta |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6888132 |
tcataaggaaaaatggataatgagagactgtgatgagccaataatatctcatattgctctcatcgcctattttcgtattgtatagtgttgtaatgttgta |
6888033 |
T |
|
| Q |
201 |
atttaagttattatacactatgat |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
6888032 |
atttaagttattatacactatgat |
6888009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 110 - 172
Target Start/End: Original strand, 37247473 - 37247535
Alignment:
| Q |
110 |
aaaatagataatgagagactgtgatgagccaataatatctcatattgctctcatcgcctattt |
172 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| | || |||||| || |||| |||||||| |
|
|
| T |
37247473 |
aaaatagatactgagagactgtgatgagccaatactctcccatatttctttcattgcctattt |
37247535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 26 - 194
Target Start/End: Complemental strand, 1229510 - 1229342
Alignment:
| Q |
26 |
caaaaggccgatacaaccataaaactctgttacgaatgcgacacaccattgcggaagtgaaaaacacaacaccgttcataaggaaaaatagataatgaga |
125 |
Q |
| |
|
||||| |||||||||||| |||||||| |||||||||||||||||||||| |||||| ||||| ||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
1229510 |
caaaaagccgatacaaccttaaaactccgttacgaatgcgacacaccattacggaagcgaaaagcacaacaccgttcctaaggaaaaatagataacgaga |
1229411 |
T |
|
| Q |
126 |
gactgtgatgagccaataatatctcatattgctctcatcgcctattttcgtattgtatagtgttgtaat |
194 |
Q |
| |
|
|| ||||||||| ||||| ||||||||| | || |||||||||||||| | ||||||||||||||||| |
|
|
| T |
1229410 |
gattgtgatgagtcaatagtatctcataatactttcatcgcctattttaatgttgtatagtgttgtaat |
1229342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 75311 - 75504
Alignment:
| Q |
10 |
cccgttacgacggtggcaaaaggccgatacaaccataaaactctgttacgaatgcgacacaccattgcggaagtgaaaaacacaacaccgttcataagga |
109 |
Q |
| |
|
||||||||||| ||| |||| ||||||| ||| | | |||| ||||| ||||| | |||||||| ||| | |||||||||||||||||||||||||| |
|
|
| T |
75311 |
cccgttacgaccgtgacaaacatccgatacgaccgtgagactccgttacaaatgcaatacaccattacggttgcgaaaaacacaacaccgttcataagga |
75410 |
T |
|
| Q |
110 |
aaaatagataatgagagactgtgatgagccaataatatctcatattgctctcatcgcctattttcgtattgtatagtgttgtaatgttgtaatt |
203 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||| | ||||||||||||||| | |||||||| ||||||||||||||||| |
|
|
| T |
75411 |
aaaatagataatgagagactgtgatgagctgatagtatctcatattcatttcatcgcctattttcatgttgtatagcgttgtaatgttgtaatt |
75504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 11 - 203
Target Start/End: Complemental strand, 46824959 - 46824764
Alignment:
| Q |
11 |
ccgttacgacggtggcaaaaggccgatacaaccataaaactctgttacgaatgcgacacaccattgcggaagtgaaaaacacaacaccgttcataaggaa |
110 |
Q |
| |
|
||||||| || ||| ||||| | |||||||| | || ||||| |||| ||||| ||||||||||| |||||| |||||||||||||||||||||||| || |
|
|
| T |
46824959 |
ccgttacaaccgtgacaaaaagtcgatacaatcgtataactccgttaggaatgtgacacaccattacggaagcgaaaaacacaacaccgttcataagaaa |
46824860 |
T |
|
| Q |
111 |
aaatagataatgagagactgtgatga---gccaataatatctcatattgctctcatcgcctattttcgtattgtatagtgttgtaatgttgtaatt |
203 |
Q |
| |
|
||||| ||||||||| |||||||||| ||||||| ||||||||||| || ||||||| ||||||| | ||||||||||||||||| |||||||| |
|
|
| T |
46824859 |
aaatatataatgagaaactgtgatgagccgccaatagtatctcatatttctttcatcgcttattttcatgttgtatagtgttgtaatattgtaatt |
46824764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 21315898 - 21315693
Alignment:
| Q |
1 |
accgaaccgcccgttacgacggtggcaaaaggccgatacaaccataaaactctgttacgaatgcgacacaccattgcggaagtgaaaaacacaacaccgt |
100 |
Q |
| |
|
|||||| | |||||||| || | | ||||| || ||||||||| || ||||| ||||| ||||||||||||||| || |||| ||||||| |||| ||| |
|
|
| T |
21315898 |
accgaaacacccgttacaaccgcgacaaaaagctgatacaaccgtataactcctttacggatgcgacacaccattacgaaagttaaaaacataacatcgt |
21315799 |
T |
|
| Q |
101 |
tcataagg---aaaaatagataatgagagactgtgatgagccaataatatctcatattgctctcatcgcctattttcgtattgtatagtgttgtaatgtt |
197 |
Q |
| |
|
| |||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||| |||| | ||| ||||| ||||||||| |
|
|
| T |
21315798 |
tgataaggtaaaaaaatagataatgagagacagtgatgagccaatagtatctcatattgctttcatcgcctactttcatgttgcatagttttgtaatgta |
21315699 |
T |
|
| Q |
198 |
gtaatt |
203 |
Q |
| |
|
|||||| |
|
|
| T |
21315698 |
gtaatt |
21315693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 125
Target Start/End: Original strand, 16962050 - 16962162
Alignment:
| Q |
12 |
cgttacgacggtggcaaaaggccgatacaaccataaaactctgttacgaatgcgacacaccattgcggaagtgaaaaacacaacaccgttcataaggaaa |
111 |
Q |
| |
|
||||||||| ||| |||| |||||||||||||||||||| ||||||||||||||||| |||| | ||| |||||||||||||| |||||||||| || |
|
|
| T |
16962050 |
cgttacgaccgtgataaaaaaccgatacaaccataaaactccgttacgaatgcgacacatcattacaaaagcgaaaaacacaacactgttcataagg-aa |
16962148 |
T |
|
| Q |
112 |
aatagataatgaga |
125 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
16962149 |
agtagataatgaga |
16962162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 8 - 155
Target Start/End: Original strand, 43578762 - 43578909
Alignment:
| Q |
8 |
cgcccgttacgacggtggcaaaaggccgatacaaccataaaactctgttacgaatgcgacacaccattgcggaagtgaaaaacacaacaccgttcataag |
107 |
Q |
| |
|
||||||||| ||| ||| |||| |||||||||||| ||||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||||| |
|
|
| T |
43578762 |
cgcccgttatgaccgtgacaaacagccgatacaaccgtaaaactttgttacgaatgcgacacaccattatggaagcgaaaaacacaacacaattcataag |
43578861 |
T |
|
| Q |
108 |
gaaaaatagataatgagagactgtgatgagccaataatatctcatatt |
155 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||| ||||||||||| |
|
|
| T |
43578862 |
gaaaaatagataatgcgagagtgtgatgagccaatagtatctcatatt |
43578909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 10 - 171
Target Start/End: Original strand, 24908785 - 24908944
Alignment:
| Q |
10 |
cccgttacgacggtggcaaaaggccgatacaaccataaaactctgttacgaatgcgacacaccattgcggaagtgaaaaacacaacaccgttcataagga |
109 |
Q |
| |
|
||||||||||| ||| |||||| || |||||| | |||||||| |||||||||||||||||||||| ||||| ||||||||||||| | ||||||||| |
|
|
| T |
24908785 |
cccgttacgaccgtgacaaaag-ccaatacaatcgtaaaactccgttacgaatgcgacacaccattacggaaacgaaaaacacaacaacattcataagg- |
24908882 |
T |
|
| Q |
110 |
aaaatagataatgagagactgtgatgagccaataatatctcatattgctctcatcgcctatt |
171 |
Q |
| |
|
|||||||||||||||||| |||||||| ||| || ||||||||||| || |||||||||||| |
|
|
| T |
24908883 |
aaaatagataatgagagattgtgatgaaccagtagtatctcatattcctttcatcgcctatt |
24908944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 194
Target Start/End: Original strand, 29112435 - 29112505
Alignment:
| Q |
124 |
gagactgtgatgagccaataatatctcatattgctctcatcgcctattttcgtattgtatagtgttgtaat |
194 |
Q |
| |
|
||||| |||||||||||||||||||||||||| || |||| | |||||||||| || | || ||||||||| |
|
|
| T |
29112435 |
gagacagtgatgagccaataatatctcatattcctttcattgtctattttcgtgttatgtaatgttgtaat |
29112505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 26 - 183
Target Start/End: Original strand, 6217953 - 6218109
Alignment:
| Q |
26 |
caaaaggccgatacaaccataaaactctgttacgaatgcgacacaccattgcggaagtgaaaaacacaacaccgttcataaggaaaaatagataatgaga |
125 |
Q |
| |
|
||||| |||||| ||||| |||||||| ||||| |||||||||||||||| | |||| ||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
6217953 |
caaaaagccgatgcaaccgtaaaactccgttactaatgcgacacaccattacagaagcgaaaaacacaacaacgttcataaggaaaaatacataatgaga |
6218052 |
T |
|
| Q |
126 |
gactgtgatgagccaataatatctcatattgctctcatcgcctattttcgtattgtat |
183 |
Q |
| |
|
|||| | |||||||| || ||||||||||| || ||| ||||||||||||| |||||| |
|
|
| T |
6218053 |
gactctaatgagccagtagtatctcatattcctttca-cgcctattttcgtgttgtat |
6218109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 92 - 203
Target Start/End: Complemental strand, 20763007 - 20762896
Alignment:
| Q |
92 |
caacaccgttcataaggaaaaatagataatgagagactgtgatgagccaataatatctcatattgctctcatcgcctattttcgtattgtatagtgttgt |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| | ||||||||||||||| | |||||| ||||||| |
|
|
| T |
20763007 |
caacaccgttcataaggaaaaatagataatgagagactgtgatgagctgatagtatctcatattcatttcatcgcctattttcatgttgtatggtgttgt |
20762908 |
T |
|
| Q |
192 |
aatgttgtaatt |
203 |
Q |
| |
|
|||||||||||| |
|
|
| T |
20762907 |
aatgttgtaatt |
20762896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 27054589 - 27054519
Alignment:
| Q |
124 |
gagactgtgatgagccaataatatctcatattgctctcatcgcctattttcgtattgtatagtgttgtaat |
194 |
Q |
| |
|
|||| ||||||||| ||||| ||||||||||| || ||||| |||||||||| ||||||||||||||||| |
|
|
| T |
27054589 |
gagattgtgatgagtcaatagtatctcatattcctttcatcatctattttcgtgttgtatagtgttgtaat |
27054519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 27054671 - 27054591
Alignment:
| Q |
13 |
gttacgacggtggcaaaaggccgatacaaccataaaactctgttacgaatgcgacacaccattgcggaagtgaaaaacaca |
93 |
Q |
| |
|
|||||||| ||| |||| | |||||||||| |||||||| ||| ||||||||||||||||| |||||| |||||||||| |
|
|
| T |
27054671 |
gttacgaccgtgataaaaagtcgatacaaccttaaaactccgttgtgaatgcgacacaccattacggaagcgaaaaacaca |
27054591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0191 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 30656 - 30742
Alignment:
| Q |
26 |
caaaaggccgatacaaccataaaactctgttacgaatgcgacacaccattgcggaagtgaaaaacacaacaccgttcataaggaaaaa |
113 |
Q |
| |
|
||||| ||||||||| || |||||||| | ||||| ||||||||||| || ||||| ||| |||||||||||||||||||| ||||| |
|
|
| T |
30656 |
caaaacgccgatacacccgtaaaactccgatacga-tgcgacacaccgttatggaagcgaagaacacaacaccgttcataagaaaaaa |
30742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 29351446 - 29351377
Alignment:
| Q |
32 |
gccgatacaaccataaaactctgttacgaatgcgacacaccattgcggaagtgaaaaacacaacaccgtt |
101 |
Q |
| |
|
||||||||||| |||||||| ||||||| |||||||||| |||| |||| |||| ||||||||||||| |
|
|
| T |
29351446 |
gccgatacaactataaaactttgttacgcatgcgacacatcattagggaaacgaaacacacaacaccgtt |
29351377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University