View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8433_high_4 (Length: 463)
Name: NF8433_high_4
Description: NF8433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8433_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 19 - 456
Target Start/End: Complemental strand, 27009170 - 27008733
Alignment:
| Q |
19 |
atagtttctttttctatgaatgaaatctctctatcgaagaactcgacgcgagatgtttcgagtgacaacatgtttttcatttctctaagcatagattctt |
118 |
Q |
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| T |
27009170 |
atagtttctttttctatgaatgaaatctctctatcgaagaactcgacgcgagatgtttcgagtgataacatgtttttcatttctctaagcatagattctt |
27009071 |
T |
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| Q |
119 |
tttctttcatttcacaatatttgtcaaactgtaaagttaaggctaattctctcatttgcataccttcaaccttgcttcttaagcaagtaatctcttgttc |
218 |
Q |
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| T |
27009070 |
tttctttcatttcacaatatttgtcaaactgtaaagttaaggctaattctctcatttgcataccttcaatcttgcttcttaagcaagtaatctcttgttc |
27008971 |
T |
|
| Q |
219 |
caaaccaaagctcccagaaacaacactactatctatagagttagtatattcttcttttccttcatcttccatagaagaaaagttatcaaaactttcttca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27008970 |
caaaccaaagctcccagaaacaacactactatctatagagttagtatattcttcttttccttcatcttccatagaagaaaagttatcaaaactttcttca |
27008871 |
T |
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| Q |
319 |
tgttgagttatatcatgagaattgacttcaggggtatgagaatcactttctgaaaaggaagagacttttgataagcttttctttgctatgatccatgcat |
418 |
Q |
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|||||||||| |||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
27008870 |
tgttgagttacatcatgagaatttatttcaggggtatgagagtcactttctgaaaaggaagagacttttgataagcttttctttgttatgatccatgcat |
27008771 |
T |
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| Q |
419 |
agatcaaaccagcaaaagaaacagctataggaacacca |
456 |
Q |
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| T |
27008770 |
agatcaaaccagcaaaagaaacagctataggaacacca |
27008733 |
T |
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