View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8433_low_1 (Length: 732)
Name: NF8433_low_1
Description: NF8433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8433_low_1 |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 653; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 653; E-Value: 0
Query Start/End: Original strand, 1 - 732
Target Start/End: Original strand, 18219809 - 18220540
Alignment:
| Q |
1 |
tacctccatgccattcaatgccaaagaaatttcttttagctgttcttcgattttagcctttttatgaaccagctccaaataaatatcctgcaattcaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18219809 |
tacctccatgccattcaatgccaaagaaatttcttttagctgttcttcaattttagcctttttatgaaccagctccaaataaatatcctgcaattcaaca |
18219908 |
T |
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| Q |
101 |
gataaaatcattattaaaagctactgttgtctatatgttatttgacctcccaaattcccagtcccaactttactattcatgttaaccgttagcaatgagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18219909 |
gataaaatcattattaaaagctactgttgtctatatgtcatgtgacctcccaaattcccagtcccaactttactattcatgttaaccgttagcaatgagc |
18220008 |
T |
|
| Q |
201 |
tggtactactatgcttcctctcacctgcttagaaacctgggaaccatggtcctcaaaattcaaacttgacatacaagaactaggagtagtcacaagagcc |
300 |
Q |
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| T |
18220009 |
tggtactactatgcttcctctcacctgcttagaaacctgggaaccatagtcctcaaaattcaaacttgacatacaagaactaggagtagtcacaagagcc |
18220108 |
T |
|
| Q |
301 |
aatgcttcctcttctctttttgatgtgagctccctcatttctctgtttgcagatcaagaaaagtaagcaataactcaatcaatagaataaccaataacac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18220109 |
aatgcttcctcttctctttttgatgtgagctccctcatttctctgtttgcagatcaagaaaagtaagcaataactcaatcaatagaataaccaataacac |
18220208 |
T |
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| Q |
401 |
tggtcattcgatcatnnnnnnnnnnnnnnnnntgaaattggcaataccttttcaacttaattatttcctcctttatctctctgagttcatgactcgtaac |
500 |
Q |
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| T |
18220209 |
tggccattcaatcataaaaataaaataaaaaatgaaattggcaataccttttcaacttaattatttcctcctttatctctctgagttcatgactagtaac |
18220308 |
T |
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| Q |
501 |
attttctggtgaaatgctgtcaccaggcttccaaccagggggaggagtccagtaaggatcttgaacacccaattcctttctaatatcagcaagatcagca |
600 |
Q |
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| T |
18220309 |
attttctggtgaaatgctgtcaccaggcttccaaccagggggaggagtccagtaaggatcttgaacacccaattcctttctaatatcagcaagatcagca |
18220408 |
T |
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| Q |
601 |
ctctctaaccagtattccattgaaccttcggcattgtgtttccgtctgaatctttcaactcctcctggtgccacttttccagccatgtgtttcagcaaat |
700 |
Q |
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| T |
18220409 |
ctctctaaccagtattccattgaaccttcggcattgtgtttccgtctgaatctttcaactcctcctggtgccacttttccagccatgtgtttcagcaaat |
18220508 |
T |
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| Q |
701 |
gatcaagtaaacctgtgtcaccaatatacttt |
732 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
18220509 |
gatcaagtaaacctgtgtcaccaatatacttt |
18220540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 319 - 732
Target Start/End: Original strand, 43011907 - 43012316
Alignment:
| Q |
319 |
tttgatgtgagctccctcatttctctgtttgcagatcaagaaaagtaagcaataactcaa--tcaatagaataaccaataacactggtcattcgatcatn |
416 |
Q |
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|||||| | |||||||||||||| ||||||||||||||||||||||| | |||| |||| |||||||||||||||||||||| ||||||| ||||| |
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| T |
43011907 |
tttgattttagctccctcatttcactgtttgcagatcaagaaaagtatgtgataaatcaaaatcaatagaataaccaataacaccagtcattcaatcata |
43012006 |
T |
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| Q |
417 |
nnnnnnnnnnnnnnnntgaaattggcaataccttttcaacttaattatttcctcctttat---ctctctgagttcatgactcgtaacattttctggtgaa |
513 |
Q |
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| T |
43012007 |
aaatggaaaa------tgaaactggcaataccgtttcaacttaattatttcctcctttatgatctctctgagttcattactagtaacatattctggtgca |
43012100 |
T |
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| Q |
514 |
atgctgtcaccaggcttccaaccagggggaggagtccagtaaggatcttgaacacccaattcctttctaatatcagcaagatcagcactctctaaccagt |
613 |
Q |
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| T |
43012101 |
atgctgtctccaggcttccagccagggggaggagtccagtaggggtcttga---cccaattcctttctaagatcagcaagatcagcactctctaaccagt |
43012197 |
T |
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| Q |
614 |
attccattgaaccttcggcattgtgtttccgtctgaatctttcaactcctcctggtgccacttttccagccatgtgtttcagcaaatgatcaagtaaacc |
713 |
Q |
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| T |
43012198 |
attccattgaaccttcggcattgtgtttccgtctgaatctatcaactcctcctggtgccacttttccagccatgtgtttcaacaaatgatcaagtaaacc |
43012297 |
T |
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| Q |
714 |
tgtgtcaccaatatacttt |
732 |
Q |
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||||||||||||||||||| |
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| T |
43012298 |
tgtgtcaccaatatacttt |
43012316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 43011636 - 43011873
Alignment:
| Q |
1 |
tacctccatgccattcaatgccaaagaaatttcttttagctgttcttcgattttagcctttttatgaaccagctccaaataaatatcctgcaattcaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
43011636 |
tacctccatgccattcaatgccaaagaaatttcttttagctgttcttcaattttagcctttttatgaaccagctccaaataaatatcctgaaatataaca |
43011735 |
T |
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| Q |
101 |
gataaaatcattattaaaagctactgttgtctatatgttatttgacctcccaaattcccagtcccaactttactattcatgttaaccgttagcaatgagc |
200 |
Q |
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|||| ||| |||||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
43011736 |
gatagaataattattaaaaactactgttgtctatatgacatgtgacctcccaaattcccagt-----ttttactattcatgttaattgttagcaatgagc |
43011830 |
T |
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| Q |
201 |
tggtactactatgcttcctctcacctgcttagaaacctgggaa |
243 |
Q |
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||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
43011831 |
tgggactactatgcttcccctcacctgcttagaaacctgggaa |
43011873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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