View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8433_low_12 (Length: 259)
Name: NF8433_low_12
Description: NF8433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8433_low_12 |
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| [»] scaffold0006 (1 HSPs) |
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| [»] scaffold0182 (1 HSPs) |
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Alignment Details
Target: scaffold0006 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 276365 - 276622
Alignment:
| Q |
1 |
ttgcctacatatttgtcaaaa-aagagttgatgctctctgatctttgagttgttgacatgccaccgaaaaaggtatctttcatgtaaacaggaacccaat |
99 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
276365 |
ttgcctacatatttgtcaaaaaaagagttgatgctctctgatctttgagttgttgacatgccaccgaaaaaggtatctttcatgtaaacaggaacccaat |
276464 |
T |
|
| Q |
100 |
gtttacgttcttcatataaagactgaatccacccatcctctgagtttgatagttgaaatttctctaccatttctgcccaattaacttcaaactgttgtat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
276465 |
gtttacgttcttcatataaagactgaatccacccatcctctgagtttgatagttgaaatttctctaccatttctgcccaattaacttcaaactgttgtat |
276564 |
T |
|
| Q |
200 |
tgacagagacttgtatatacatgcgtcaaaatatcccatgaaatcttcattatgtctt |
257 |
Q |
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|||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||| |
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| T |
276565 |
tgacagagacttgtatatgcatgcatcaaaatatcccatgaaatcttcattatttctt |
276622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 26396970 - 26397227
Alignment:
| Q |
1 |
ttgcctacatatttgtcaaaa-aagagttgatgctctctgatctttgagttgttgacatgccaccgaaaaaggtatctttcatgtaaacaggaacccaat |
99 |
Q |
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|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26396970 |
ttgcctacatatttgtcaaaaaaagagttgatgctctctgatctttgagttgttgacatgccaccgaaaaaggtatctttcatgtaaacaggaacccaat |
26397069 |
T |
|
| Q |
100 |
gtttacgttcttcatataaagactgaatccacccatcctctgagtttgatagttgaaatttctctaccatttctgcccaattaacttcaaactgttgtat |
199 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26397070 |
gtttacgttcttcatataaagactgaatccacccatcctctgagtttgatagttgaaatttctctaccatttctgcccaattaacttcaaactgttgtat |
26397169 |
T |
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| Q |
200 |
tgacagagacttgtatatacatgcgtcaaaatatcccatgaaatcttcattatgtctt |
257 |
Q |
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|||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||| |
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| T |
26397170 |
tgacagagacttgtatatgcatgcatcaaaatatcccatgaaatcttcattatttctt |
26397227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 135
Target Start/End: Original strand, 19219484 - 19219616
Alignment:
| Q |
4 |
cctacatatttgtcaaaaaa-gagttgatgctctctgatctttgagttgttgacatgccaccgaaaaaggtatctttcatgtaaacaggaacccaatgtt |
102 |
Q |
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|
|||||||||||||| ||||| || || |||||||| || | |||||||||||||| |||| ||||| ||||| | ||||||| |||||| ||||| | |
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| T |
19219484 |
cctacatatttgtcgaaaaatgaattaatgctctcatatatctgagttgttgacataccacaaaaaaaagtatccattatgtaaataggaactcaatgat |
19219583 |
T |
|
| Q |
103 |
tacgttcttcatataaagactgaatccacccat |
135 |
Q |
| |
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| ||| ||||||||||||| ||| ||||||| |
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| T |
19219584 |
catgtttatcatataaagacttaattcacccat |
19219616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 29255 - 29512
Alignment:
| Q |
1 |
ttgcctacatatttgtcaaaa-aagagttgatgctctctgatctttgagttgttgacatgccaccgaaaaaggtatctttcatgtaaacaggaacccaat |
99 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29255 |
ttgcctacatatttgtcaaaaaaagagttgatgctctctaatctttgagttgttgacatgccagcgaaaaaggtatctttcatgtaaacaggaacccaat |
29354 |
T |
|
| Q |
100 |
gtttacgttcttcatataaagactgaatccacccatcctctgagtttgatagttgaaatttctctaccatttctgcccaattaacttcaaactgttgtat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29355 |
gtttacgttcttcatataaagactgaatccacccatcctctgagtttgatagttgaaatttctctaccatttctgcccaattaacttcaaactgttgtat |
29454 |
T |
|
| Q |
200 |
tgacagagacttgtatatacatgcgtcaaaatatcccatgaaatcttcattatgtctt |
257 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
29455 |
tgacagagacttgtatatgcatgcgtcaaaatatcccatgaaatcttcattatttctt |
29512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 6 - 250
Target Start/End: Original strand, 20645716 - 20645955
Alignment:
| Q |
6 |
tacatatttgtcaaaaaag-agttgatgctctctgatctttgagttgttgacatgccaccgaaaaaggtatctttcatgtaaacaggaacccaatgttta |
104 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||| ||||||| | |
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| T |
20645716 |
tacatatttgtcgaaaaaggagttgatgctctctgatctttgagttgttgacataccaccaaaaaatgtatctttcatgtaaacaggaattcaatgttca |
20645815 |
T |
|
| Q |
105 |
cgttcttcatataaagactgaatccacccatcctctgagtttgatagttgaaatttctctaccatttctgcccaattaacttcaaactgttgtattgaca |
204 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||| || || |||||||| |||||||||||| | || ||| ||| ||||||||||||||| |
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| T |
20645816 |
cgttcttcatataacgactgaatccatacatcctc------agacagctgaaatttttctaccatttcttctcatttatcttgaaactgttgtattgaac |
20645909 |
T |
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| Q |
205 |
gagacttgtatatacatgcgtcaaaatatcccatgaaatcttcatt |
250 |
Q |
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| |||||||| || |||| || |||||||||||||||||| ||||| |
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| T |
20645910 |
gggacttgtaaatgcatgagttaaaatatcccatgaaatcatcatt |
20645955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 6 - 130
Target Start/End: Complemental strand, 56109064 - 56108939
Alignment:
| Q |
6 |
tacatatttgtcaaaaaa-gagttgatgctctctgatctttgagttgttgacatgccaccgaaaaaggtatctttcatgtaaacaggaacccaatgttta |
104 |
Q |
| |
|
|||||||||||||||||| || || |||||||||||||||||||||||||||| |||||| ||||| ||||| ||||||||||||||||||||||||| | |
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| T |
56109064 |
tacatatttgtcaaaaaaagaattaatgctctctgatctttgagttgttgacaagccaccaaaaaatgtatcattcatgtaaacaggaacccaatgttca |
56108965 |
T |
|
| Q |
105 |
cgttcttcatataaagactgaatcca |
130 |
Q |
| |
|
||||||||||||||||| |||||||| |
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| T |
56108964 |
cgttcttcatataaagagtgaatcca |
56108939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 6 - 127
Target Start/End: Complemental strand, 26014831 - 26014709
Alignment:
| Q |
6 |
tacatatttgtcaaaaaa-gagttgatgctctctgatctttgagttgttgacatgccaccgaaaaaggtatctttcatgtaaacaggaacccaatgttta |
104 |
Q |
| |
|
|||||||||||||||||| || || |||||||||||||||||||||||||||| |||||| ||||| ||||| ||||||||||||||||||||||||| | |
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| T |
26014831 |
tacatatttgtcaaaaaaagaattaatgctctctgatctttgagttgttgacaagccaccaaaaaatgtatcattcatgtaaacaggaacccaatgttca |
26014732 |
T |
|
| Q |
105 |
cgttcttcatataaagactgaat |
127 |
Q |
| |
|
||||||||||||||||| ||||| |
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|
| T |
26014731 |
cgttcttcatataaagagtgaat |
26014709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 6967497 - 6967394
Alignment:
| Q |
6 |
tacatatttgtcaaaaaa-gagttgatgctctctgatctttgagttgttgacatgccaccgaaaaaggtatctttcatgtaaacaggaacccaatgttta |
104 |
Q |
| |
|
|||||||||||||||||| || || |||||||||||||||||||||||||||| |||||| ||||| ||||| |||||||||| |||||||||||||| | |
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|
| T |
6967497 |
tacatatttgtcaaaaaaagaattaatgctctctgatctttgagttgttgacaagccaccaaaaaatgtatcattcatgtaaataggaacccaatgttca |
6967398 |
T |
|
| Q |
105 |
cgtt |
108 |
Q |
| |
|
|||| |
|
|
| T |
6967397 |
cgtt |
6967394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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