View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8433_low_2 (Length: 643)

Name: NF8433_low_2
Description: NF8433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8433_low_2
NF8433_low_2
[»] chr8 (7 HSPs)
chr8 (175-624)||(15865326-15865774)
chr8 (175-624)||(15858257-15858706)
chr8 (175-607)||(15844122-15844554)
chr8 (264-621)||(15851446-15851803)
chr8 (58-148)||(15857923-15858006)
chr8 (21-77)||(15843790-15843846)
chr8 (157-185)||(15865263-15865291)
[»] chr2 (10 HSPs)
chr2 (377-604)||(30484669-30484896)
chr2 (424-610)||(30404475-30404661)
chr2 (424-577)||(8378960-8379113)
chr2 (444-572)||(30384998-30385126)
chr2 (418-593)||(23783310-23783485)
chr2 (418-572)||(30476523-30476677)
chr2 (424-572)||(30395750-30395898)
chr2 (418-572)||(30425283-30425437)
chr2 (380-593)||(23768597-23768810)
chr2 (418-475)||(30431413-30431470)
[»] chr4 (1 HSPs)
chr4 (430-529)||(11019478-11019577)
[»] chr5 (1 HSPs)
chr5 (378-571)||(41626763-41626956)


Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 175 - 624
Target Start/End: Original strand, 15865326 - 15865774
Alignment:
Q  175 aattcataaactcatacctgtggtttcttatacaaatcaatagtgtcttaatttaaagaaactcaggtttacagataaatcacccaaaaaagttaaccga 274  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||| ||| || | |    
T  15865326 aattcataaactcatacctgtggtttcttatacaaatcaata-tgtcttaatttaaagaaactcatgtttacagataaatcacctaaaagagtaaagcta 15865424  T
Q  275 ctaaataactccgttggatgtgctcttacagtttatgcaaaatgatgcttgccccatattttggcgtcaaagtaagcacagtggtaggaacatgcacata 374  Q
    || ||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||    
T  15865425 ctgaataactccattggatgtgctcttacagtttatgcaaaatgatgcttgcaccattttttggcgtcaaagtaagcacagtggtgggaacatgcacata 15865524  T
Q  375 atttggagaaagtttgaatgagaaattctgcagcaacaatgaaattgctatctttgcttctaataaggcaaagttttgtccaagacaaattctaggaccc 474  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  15865525 atttggagaaagttcgaatgagaaattctgcagcagcaatgaaattgctatctttgcttctagtaaggcaaagttttgtccaagacaaattctaggaccc 15865624  T
Q  475 catccaaaagggaaataagaaacttgtccttttgttgccttcgcaattccttcagcaaacctttcaggattgaactcctttgcatcatcaccccatagat 574  Q
    ||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15865625 catccaaaagggaaataagaaacttttccttttgtagcctttgcaattccttcagcaaacctttcaggtttgaactcctttgcatcatcaccccatagat 15865724  T
Q  575 catgatcttggtgaatcaatagtattggtagggaaatttgtgttccttca 624  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15865725 catgatcttggtgaatcaatagtattggtagggaaatttgtgttccttca 15865774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 175 - 624
Target Start/End: Original strand, 15858257 - 15858706
Alignment:
Q  175 aattcataaactcatacctgtggtttcttatacaaatcaatagtgtcttaatttaaagaaactcaggtttacagataaatcacccaaaaaagttaaccga 274  Q
    |||||| ||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||  |||| || |   |||||| ||||||||||||| |    
T  15858257 aattcaaaaactcatacctgtggtttcttacataaagcaatagtgtcttaatttaaagaaactcgtgtttccaaaatcatcacctaaaaaagttaaccta 15858356  T
Q  275 ctaaataactccgttggatgtgctcttacagtttatgcaaaatgatgcttgccccatattttggcgtcaaagtaagcacagtggtaggaacatgcacata 374  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||| ||||||||||||||||||||    
T  15858357 ctaagtaactccattggatgtgctcttacagtttatgcaaaatgatgcttgccccattttttggctgcaaagtaagcaccgtggtaggaacatgcacata 15858456  T
Q  375 atttggagaaagtttgaatgagaaattctgcagcaacaatgaaattgctatctttgcttctaataaggcaaagttttgtccaagacaaattctaggaccc 474  Q
    |||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15858457 atttggagaaagttcgaatgagaaattctgcagcaacaatgatactgctatctttgcttctaataaggcaaagttttgtccaagacaaattctaggaccc 15858556  T
Q  475 catccaaaagggaaataagaaacttgtccttttgttgccttcgcaattccttcagcaaacctttcaggattgaactcctttgcatcatcaccccatagat 574  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15858557 catccaaaagggaaataagaaacttgtccttttgttgccttcgcaattccttcagcaaacctttcaggtttgaactcctttgcatcatcaccccatagat 15858656  T
Q  575 catgatcttggtgaatcaatagtattggtagggaaatttgtgttccttca 624  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15858657 catgatcttggtgaatcaatagtattggtagggaaatttgtgttccttca 15858706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 175 - 607
Target Start/End: Original strand, 15844122 - 15844554
Alignment:
Q  175 aattcataaactcatacctgtggtttcttatacaaatcaatagtgtcttaatttaaagaaactcaggtttacagataaatcacccaaaaaagttaaccga 274  Q
    ||||||||||||||| |||||||||| ||| | ||| |||||||||| || |||||| ||| ||| |||| ||||||||||||| |||| ||||||   |    
T  15844122 aattcataaactcatccctgtggtttattacataaagcaatagtgtcctattttaaataaattcatgtttccagataaatcacctaaaagagttaagata 15844221  T
Q  275 ctaaataactccgttggatgtgctcttacagtttatgcaaaatgatgcttgccccatattttggcgtcaaagtaagcacagtggtaggaacatgcacata 374  Q
     ||| | |||||  ||||  ||||||||||||||||||||||||||| |||||||||  |||||| |||||||||||||  ||||||||| |||| ||||    
T  15844222 ttaagtgactccaatggacatgctcttacagtttatgcaaaatgatgattgccccattctttggcatcaaagtaagcaccatggtaggaagatgcgcata 15844321  T
Q  375 atttggagaaagtttgaatgagaaattctgcagcaacaatgaaattgctatctttgcttctaataaggcaaagttttgtccaagacaaattctaggaccc 474  Q
    ||| ||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15844322 attaggagaaagttcaaatgagaaattctgcagcaacaatgatattgctatctttgcttctaataaggtaaagttttgtccaagacaaattctaggaccc 15844421  T
Q  475 catccaaaagggaaataagaaacttgtccttttgttgccttcgcaattccttcagcaaacctttcaggattgaactcctttgcatcatcaccccatagat 574  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||    
T  15844422 catccaaaggggaaataagaaacttgtccttttgttgccttcgcaattccttcagcaaacctttcgggtttgaactcctttgcatcatccccccatagat 15844521  T
Q  575 catgatcttggtgaatcaatagtattggtaggg 607  Q
    | ||||| ||||||||||||| |||||||||||    
T  15844522 cttgatcatggtgaatcaatactattggtaggg 15844554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 264 - 621
Target Start/End: Original strand, 15851446 - 15851803
Alignment:
Q  264 aagttaaccgactaaataactccgttggatgtgctcttacagtttatgcaaaatgatgcttgccccatattttggcgtcaaagtaagcacagtggtagga 363  Q
    ||||||| | ||||| ||||||| || ||| ||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||| ||| |||||    
T  15851446 aagttaagctactaagtaactccattagatatgctcttacagtttatgcaaaatgatgcttgccccattttttggctgcaaagtaagcaccgtgatagga 15851545  T
Q  364 acatgcacataatttggagaaagtttgaatgagaaattctgcagcaacaatgaaattgctatctttgcttctaataaggcaaagttttgtccaagacaaa 463  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  15851546 acatgcacataattaggagaaagttcgaatgagaaattctgcagcaacagtgatattgctatctttgcttctaataaggcaaagttttgtccaagacaaa 15851645  T
Q  464 ttctaggaccccatccaaaagggaaataagaaacttgtccttttgttgccttcgcaattccttcagcaaacctttcaggattgaactcctttgcatcatc 563  Q
    |||||||||||||||||||||||| ||| |||||||| |||||||| ||||| ||||||||||||| ||||| |||||||||||||| ||||||||||||    
T  15851646 ttctaggaccccatccaaaagggatatacgaaacttggccttttgtggcctttgcaattccttcagaaaaccgttcaggattgaacttctttgcatcatc 15851745  T
Q  564 accccatagatcatgatcttggtgaatcaatagtattggtagggaaatttgtgttcct 621  Q
    |||||||||||| |||||||||||||||||  ||| |||||| |||| ||||||||||    
T  15851746 accccatagatcttgatcttggtgaatcaaatgtactggtagcgaaacttgtgttcct 15851803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 15857923 - 15858006
Alignment:
Q  58 ctttttctataatccaacgacgccaaagcccaaaggtgcaacaaacaaaaccagccagcagcaatatcaaaaagtgacatactcgtccagg 148  Q
    |||||||||||||||||||||||||||         ||||||||||||||||||| |||||| ||||||||| ||||||| ||||||||||    
T  15857923 ctttttctataatccaacgacgccaaaat-------tgcaacaaacaaaaccagcaagcagctatatcaaaatgtgacatcctcgtccagg 15858006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 15843790 - 15843846
Alignment:
Q  21 caggagtagaaaatatatcagatagtatgctcggatcctttttctataatccaacga 77  Q
    |||||||||||||| | ||||||| ||||||||||  ||||||||||||||||||||    
T  15843790 caggagtagaaaatttgtcagatattatgctcggactctttttctataatccaacga 15843846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 157 - 185
Target Start/End: Original strand, 15865263 - 15865291
Alignment:
Q  157 tcatattggagcaatattaattcataaac 185  Q
    |||||||||||||||||||||||||||||    
T  15865263 tcatattggagcaatattaattcataaac 15865291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 377 - 604
Target Start/End: Complemental strand, 30484896 - 30484669
Alignment:
Q  377 ttggagaaagtttgaatgagaaattctgcagcaacaatgaaattgctatctttgcttctaataaggcaaagttttgtccaagacaaattctaggacccca 476  Q
    ||||||||||||  |||||||||| |||||  | |||||  ||||| ||||||||||| || | || |||||||||||||| |||||||||||||||||     
T  30484896 ttggagaaagttcaaatgagaaatgctgcaaaatcaatgttattgccatctttgcttccaacatggaaaagttttgtccaatacaaattctaggaccccc 30484797  T
Q  477 tccaaaagggaaataagaaacttgtccttttgttgccttcgcaattccttcagcaaacctttcaggattgaactcctttgcatcatcaccccatagatca 576  Q
    |||||| || ||| | |||  |   || |||||||| || | || |||||| ||||| || |||||||||||| |||| ||||| ||||||||||| |||    
T  30484796 tccaaatggaaaaaatgaatttctaccatttgttgcttttgaaactccttctgcaaatctctcaggattgaacaccttagcatcttcaccccatagttca 30484697  T
Q  577 tgatcttggtgaatcaatagtattggta 604  Q
    || |  ||||||||| | | ||||||||    
T  30484696 tggttgtggtgaatccaaactattggta 30484669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 424 - 610
Target Start/End: Complemental strand, 30404661 - 30404475
Alignment:
Q  424 atctttgcttctaataaggcaaagttttgtccaagacaaattctaggaccccatccaaaagggaaataagaaacttgtccttttgttgccttcgcaattc 523  Q
    ||||||||||||||||| ||||||||||| || |  |||| |||||||||  | ||||| |||||| || ||||||| ||||||||||| || || ||||    
T  30404661 atctttgcttctaataaagcaaagttttgccccatgcaaactctaggaccataaccaaatgggaaaaaacaaacttggccttttgttgcttttgcgattc 30404562  T
Q  524 cttcagcaaacctttcaggattgaactcctttgcatcatcaccccatagatcatgatcttggtgaatcaatagtattggtagggaaa 610  Q
    |||| | ||| || || |||||||||||  | |||||||| ||||| | |||  |||  |||||||| || |||||||||| |||||    
T  30404561 cttccgaaaatctctctggattgaactcagtggcatcatctccccaaatatcgcgattgtggtgaattaagagtattggtaaggaaa 30404475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 424 - 577
Target Start/End: Original strand, 8378960 - 8379113
Alignment:
Q  424 atctttgcttctaataaggcaaagttttgtccaagacaaattctaggaccccatccaaaagggaaataagaaacttgtccttttgttgccttcgcaattc 523  Q
    ||||||||||| |||| || |||||||||||| |  |||| ||||||||||| |||||| || |||||   || |   || |||||||| || | |||||    
T  8378960 atctttgcttccaatagggaaaagttttgtcccatgcaaactctaggaccccctccaaatggaaaatatataaatctaccatttgttgctttggaaattc 8379059  T
Q  524 cttcagcaaacctttcaggattgaactcctttgcatcatcaccccatagatcat 577  Q
    |||||||||| || ||||||||||||  ||||||||||||||||||||| ||||    
T  8379060 cttcagcaaatctctcaggattgaacatctttgcatcatcaccccatagttcat 8379113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 444 - 572
Target Start/End: Complemental strand, 30385126 - 30384998
Alignment:
Q  444 aaagttttgtccaagacaaattctaggaccccatccaaaagggaaataagaaacttgtccttttgttgccttcgcaattccttcagcaaacctttcagga 543  Q
    ||||||||||||||  ||||||| ||||||||||||||| || ||| | ||||||  ||| |||||||| || | ||||||| ||  ||| |||||||||    
T  30385126 aaagttttgtccaatgcaaattcgaggaccccatccaaatggaaaaaatgaaactcttccatttgttgctttggaaattcctccaaaaaatctttcagga 30385027  T
Q  544 ttgaactcctttgcatcatcaccccatag 572  Q
    ||||||   || |||||||||||||||||    
T  30385026 ttgaacattttagcatcatcaccccatag 30384998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 418 - 593
Target Start/End: Original strand, 23783310 - 23783485
Alignment:
Q  418 attgctatctttgcttctaataaggcaaagttttgtccaagacaaattctaggaccccatccaaaagggaaataagaaacttgtccttttgttgccttcg 517  Q
    ||||| ||||||||||| || | || ||||||||||||||  || ||||||||||||  |||||| || ||||| |||| |   || |||||||| || |    
T  23783310 attgccatctttgcttccaacagggaaaagttttgtccaatgcagattctaggacccgctccaaacggaaaatatgaaaatctaccgtttgttgctttgg 23783409  T
Q  518 caattccttcagcaaacctttcaggattgaactcctttgcatcatcaccccatagatcatgatcttggtgaatcaa 593  Q
     ||||||  ||| ||| || |||||||||||   ||| ||||||||||||||||| |||  ||| |||||||||||    
T  23783410 aaattccaccagaaaatctctcaggattgaaaatcttagcatcatcaccccatagttcacaatcatggtgaatcaa 23783485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 418 - 572
Target Start/End: Complemental strand, 30476677 - 30476523
Alignment:
Q  418 attgctatctttgcttctaataaggcaaagttttgtccaagacaaattctaggaccccatccaaaagggaaataagaaacttgtccttttgttgccttcg 517  Q
    ||||| ||||||||||| || | || ||| ||||||||||  |||||||| ||||||| |||||| || ||| | |||| |   || |||||||| || |    
T  30476677 attgccatctttgcttccaacatggaaaaattttgtccaatgcaaattcttggaccccctccaaatggaaaaaatgaaaatctcccatttgttgctttgg 30476578  T
Q  518 caattccttcagcaaacctttcaggattgaactcctttgcatcatcaccccatag 572  Q
     ||||||| ||| ||| || |||||||||||| |||| ||||| |||||||||||    
T  30476577 aaattcctccagaaaatctctcaggattgaacaccttagcatcttcaccccatag 30476523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 424 - 572
Target Start/End: Complemental strand, 30395898 - 30395750
Alignment:
Q  424 atctttgcttctaataaggcaaagttttgtccaagacaaattctaggaccccatccaaaagggaaataagaaacttgtccttttgttgccttcgcaattc 523  Q
    ||||||||||| | || || ||||||||||||||  |||||||| |||||||||||||| || ||| | ||||||   || |||||||| || | |||||    
T  30395898 atctttgcttccattagggaaaagttttgtccaatgcaaattcttggaccccatccaaatggaaaaaatgaaactctaccatttgttgctttagaaattc 30395799  T
Q  524 cttcagcaaacctttcaggattgaactcctttgcatcatcaccccatag 572  Q
    || | | ||| || ||||||||||||   || |||||||| ||||||||    
T  30395798 ctccggaaaatctctcaggattgaacattttagcatcatcgccccatag 30395750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 418 - 572
Target Start/End: Complemental strand, 30425437 - 30425283
Alignment:
Q  418 attgctatctttgcttctaataaggcaaagttttgtccaagacaaattctaggaccccatccaaaagggaaataagaaacttgtccttttgttgccttcg 517  Q
    ||||| ||||||||||| || |  | ||||||||||||||  |||||||||||||||| |||||| || ||| | |||  |  ||| |||||||| ||      
T  30425437 attgccatctttgcttccaacatagaaaagttttgtccaatgcaaattctaggaccccctccaaatggaaaaaatgaatttcttccatttgttgctttta 30425338  T
Q  518 caattccttcagcaaacctttcaggattgaactcctttgcatcatcaccccatag 572  Q
     ||  ||||| | ||| || || ||||||||| |||| |||||||||||||||||    
T  30425337 aaacaccttctgaaaatctctcgggattgaacaccttagcatcatcaccccatag 30425283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 593
Target Start/End: Complemental strand, 23768810 - 23768597
Alignment:
Q  380 gagaaagtttgaatgagaaattctgcagcaacaatgaaattgctatctttgcttctaataaggcaaagttttgtccaagacaaattctaggaccccatcc 479  Q
    |||||||||  ||||| |||||||| |  | |||||  ||||| ||||||||||| ||||  | |||| | |||||||  || |||||||||||   |||    
T  23768810 gagaaagttcaaatgaaaaattctgtaaaatcaatgccattgccatctttgcttccaatagagaaaaggtctgtccaatgcagattctaggacctgctcc 23768711  T
Q  480 aaaagggaaataagaaacttgtccttttgttgccttcgcaattccttcagcaaacctttcaggattgaactcctttgcatcatcaccccatagatcatga 579  Q
    ||| || ||||| |||| |   || |||||||| || | ||||||  ||| ||| || |||||||||||   ||| ||||||||||||||||| |||  |    
T  23768710 aaacggaaaatatgaaaatctaccgtttgttgctttggaaattccaccagaaaatctctcaggattgaaaatcttagcatcatcaccccatagttcacaa 23768611  T
Q  580 tcttggtgaatcaa 593  Q
    || |||||||||||    
T  23768610 tcatggtgaatcaa 23768597  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 475
Target Start/End: Complemental strand, 30431470 - 30431413
Alignment:
Q  418 attgctatctttgcttctaataaggcaaagttttgtccaagacaaattctaggacccc 475  Q
    ||||| ||||||||||| || | || ||||||||||||||  ||||||||||||||||    
T  30431470 attgccatctttgcttccaacatggaaaagttttgtccaattcaaattctaggacccc 30431413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 430 - 529
Target Start/End: Complemental strand, 11019577 - 11019478
Alignment:
Q  430 gcttctaataaggcaaagttttgtccaagacaaattctaggaccccatccaaaagggaaataagaaacttgtccttttgttgccttcgcaattccttcag 529  Q
    |||||||||||  ||||||||||||||| ||||| ||| ||||||||||||||||| || ||||||||||  || ||||||||||| | || ||||||||    
T  11019577 gcttctaataaaccaaagttttgtccaatacaaagtcttggaccccatccaaaaggcaagtaagaaactttgccatttgttgcctttgaaactccttcag 11019478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 378 - 571
Target Start/End: Original strand, 41626763 - 41626956
Alignment:
Q  378 tggagaaagtttgaatgagaaattctgcagcaacaatgaaattgctatctttgcttctaataaggcaaagttttgtccaagacaaattctaggaccccat 477  Q
    |||||||||||  |||||||||| ||| |  | |||||  ||||| ||||||||||| ||||  | ||||||||| ||||  || || ||||||||||||    
T  41626763 tggagaaagttgaaatgagaaatgctgtaaaatcaatgtcattgccatctttgcttccaatagagaaaagttttgcccaatgcagatcctaggaccccat 41626862  T
Q  478 ccaaaagggaaataagaaacttgtccttttgttgccttcgcaattccttcagcaaacctttcaggattgaactcctttgcatcatcaccccata 571  Q
    ||||| || ||| | ||||||   || || ||||| || | ||||||| ||| ||| |||||||||||||||   || ||||||||||||||||    
T  41626863 ccaaatggaaaaaatgaaactctaccgttcgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcaccccata 41626956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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