View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8433_low_3 (Length: 614)

Name: NF8433_low_3
Description: NF8433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8433_low_3
NF8433_low_3
[»] chr7 (5 HSPs)
chr7 (20-325)||(4656104-4656417)
chr7 (423-609)||(4655858-4656042)
chr7 (423-466)||(30486668-30486711)
chr7 (423-466)||(27163178-27163221)
chr7 (131-172)||(37446811-37446852)
[»] chr8 (1 HSPs)
chr8 (131-172)||(8813536-8813577)
[»] chr6 (5 HSPs)
chr6 (131-172)||(27771187-27771228)
chr6 (259-303)||(33167958-33168002)
chr6 (423-482)||(31632191-31632250)
chr6 (259-323)||(24120539-24120603)
chr6 (131-172)||(27118805-27118846)
[»] chr5 (5 HSPs)
chr5 (131-172)||(12874039-12874080)
chr5 (423-481)||(13654507-13654565)
chr5 (424-466)||(36409651-36409693)
chr5 (172-201)||(12874099-12874128)
chr5 (423-479)||(10495211-10495267)
[»] chr4 (5 HSPs)
chr4 (423-478)||(20814530-20814585)
chr4 (423-482)||(31933644-31933703)
chr4 (423-466)||(33520625-33520668)
chr4 (423-479)||(20814613-20814669)
chr4 (423-475)||(31864333-31864385)
[»] chr2 (1 HSPs)
chr2 (131-172)||(9362163-9362204)
[»] chr1 (1 HSPs)
chr1 (260-313)||(3306800-3306853)


Alignment Details
Target: chr7 (Bit Score: 184; Significance: 3e-99; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 20 - 325
Target Start/End: Complemental strand, 4656417 - 4656104
Alignment:
Q  20 ttgttaaattaaaattttcagaggaattataggttgagtttgtttttaaaaaatagatgttgtaaagcaaagaaaatcatgaaaataatataacttatag 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  4656417 ttgttaaattaaaattttcagaggaattataggttgagtttgtttttaaaaaacagatgttgtaaagcaaagaaaatcatgaaaatgatataacttatag 4656318  T
Q  120 gttgatgttgctaactatatatgtttaaattgttgcgaattattcgtttaactgc---------ggtagcacgggtcaagagtctagttgatttccattg 210  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||| |         || ||||||||||||||||||||||||||| |||||    
T  4656317 attgatgttgctaactatatatgtttaaattgttgcgaattattcgtttaacttctatttggatggcagcacgggtcaagagtctagttgattttcattg 4656218  T
Q  211 tttaaacaactttaaaaagtaacnnnnnnncctnnnnnnnnnngtaactttttgcatagaaaaagatgtaattattacttcgagactactttgacttgta 310  Q
    |||||||||| | ||||||||||       |||          ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4656217 tttaaacaacctaaaaaagtaacttttttccctaaaaaaaaaagtaac-ttttgcatagaaaaagatgtaattattacttcgagactactttaacttgta 4656119  T
Q  311 ttttcaaaacaaata 325  Q
    ||| |||||||||||    
T  4656118 tttccaaaacaaata 4656104  T

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Target: chr7; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 423 - 609
Target Start/End: Complemental strand, 4656042 - 4655858
Alignment:
Q  423 catcatttattaaataaatctaaaaagtcaaaatttatttataacaatgaccggagggagcattccttctgcaataccctcaaaagtcaaaacacttgct 522  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||         ||||||||| |||||||||||||||||||||||||||||    
T  4656042 catcatttattaaataaatctaaaaagtcaaaatttatttataatagtgacc---------attccttctacaataccctcaaaagtcaaaacacttgct 4655952  T
Q  523 a-------acatgatcctttataatttgatcatgcaatgttaaccgtgttaaataggtgacaccgtgttatttattacaaataagttgatgtcc 609  Q
    |       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4655951 agttgctaacatgatcctttataatttgatcatgcaatgttaaccgtgttaaataggtgacaccgtgttatttattacaaataagttgatgtcc 4655858  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 423 - 466
Target Start/End: Original strand, 30486668 - 30486711
Alignment:
Q  423 catcatttattaaataaatctaaaaagtcaaaatttatttataa 466  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||    
T  30486668 catcatttattcaataaatctaaaaagtcaaaatttacttataa 30486711  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 466
Target Start/End: Complemental strand, 27163221 - 27163178
Alignment:
Q  423 catcatttattaaataaatctaaaaagtcaaaatttatttataa 466  Q
    ||||||||||| ||| || |||||||||||||||||||||||||    
T  27163221 catcatttattcaatgaacctaaaaagtcaaaatttatttataa 27163178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 172
Target Start/End: Complemental strand, 37446852 - 37446811
Alignment:
Q  131 taactatatatgtttaaattgttgcgaattattcgtttaact 172  Q
    |||| ||||||||||| |||||||||| ||||||||||||||    
T  37446852 taacgatatatgtttacattgttgcgacttattcgtttaact 37446811  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 8813536 - 8813577
Alignment:
Q  131 taactatatatgtttaaattgttgcgaattattcgtttaact 172  Q
    |||||||||||||||| |||||||||| ||||||||||||||    
T  8813536 taactatatatgtttacattgttgcgacttattcgtttaact 8813577  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 27771187 - 27771228
Alignment:
Q  131 taactatatatgtttaaattgttgcgaattattcgtttaact 172  Q
    |||||||||||||||| |||||||||| ||||||||||||||    
T  27771187 taactatatatgtttacattgttgcgacttattcgtttaact 27771228  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 33167958 - 33168002
Alignment:
Q  259 tttttgcatagaaaaagatgtaattattacttcgagactactttg 303  Q
    |||||||||||||||  ||||||||||||||| ||||||||||||    
T  33167958 tttttgcatagaaaataatgtaattattactttgagactactttg 33168002  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 482
Target Start/End: Original strand, 31632191 - 31632250
Alignment:
Q  423 catcatttattaaataaatctaaaaagtcaaaatttatttataacaatgaccggagggag 482  Q
    ||||||||||||||| || ||||||||||||  |||| |||||| | |||||||||||||    
T  31632191 catcatttattaaatgaacctaaaaagtcaacttttacttataatagtgaccggagggag 31632250  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 323
Target Start/End: Complemental strand, 24120603 - 24120539
Alignment:
Q  259 tttttgcatagaaaaagatgtaattattacttcgagactac-tttgacttgtattttcaaaacaaa 323  Q
    ||||||||||||||| ||||||||||| |||| || | ||| ||||| ||||||||||||||||||    
T  24120603 tttttgcatagaaaatgatgtaattatgactttgata-tacatttgatttgtattttcaaaacaaa 24120539  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 172
Target Start/End: Complemental strand, 27118846 - 27118805
Alignment:
Q  131 taactatatatgtttaaattgttgcgaattattcgtttaact 172  Q
    |||||||||||||||| |||||||||| | ||||||||||||    
T  27118846 taactatatatgtttacattgttgcgactcattcgtttaact 27118805  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 12874039 - 12874080
Alignment:
Q  131 taactatatatgtttaaattgttgcgaattattcgtttaact 172  Q
    |||||||||||||||| |||||||||| ||||||||||||||    
T  12874039 taactatatatgtttacattgttgcgacttattcgtttaact 12874080  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 423 - 481
Target Start/End: Complemental strand, 13654565 - 13654507
Alignment:
Q  423 catcatttattaaataaatctaaaaagtcaaaatttatttataacaatgaccggaggga 481  Q
    ||||||||||| ||| || |||||||||||| ||||| |||||| | ||||||||||||    
T  13654565 catcatttattgaatgaacctaaaaagtcaatatttacttataatagtgaccggaggga 13654507  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 424 - 466
Target Start/End: Complemental strand, 36409693 - 36409651
Alignment:
Q  424 atcatttattaaataaatctaaaaagtcaaaatttatttataa 466  Q
    |||||||||| |||||||||||||||| |||||||| ||||||    
T  36409693 atcatttattcaataaatctaaaaagttaaaatttacttataa 36409651  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 201
Target Start/End: Original strand, 12874099 - 12874128
Alignment:
Q  172 tgcggtagcacgggtcaagagtctagttga 201  Q
    ||||||||||||||||||||||||||||||    
T  12874099 tgcggtagcacgggtcaagagtctagttga 12874128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 423 - 479
Target Start/End: Complemental strand, 10495267 - 10495211
Alignment:
Q  423 catcatttattaaataaatctaaaaagtcaaaatttatttataacaatgaccggagg 479  Q
    ||||||||||| ||| |||||||||| |||||||||| ||||||  | |||||||||    
T  10495267 catcatttattgaatgaatctaaaaaatcaaaatttacttataaataagaccggagg 10495211  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 478
Target Start/End: Complemental strand, 20814585 - 20814530
Alignment:
Q  423 catcatttattaaataaatctaaaaagtcaaaatttatttataacaatgaccggag 478  Q
    ||||||||||| ||| || |||||||||||||||||  |||||| |||||||||||    
T  20814585 catcatttattgaatgaacctaaaaagtcaaaatttgcttataataatgaccggag 20814530  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 482
Target Start/End: Complemental strand, 31933703 - 31933644
Alignment:
Q  423 catcatttattaaataaatctaaaaagtcaaaatttatttataacaatgaccggagggag 482  Q
    ||||||||||||||| ||||||||||||  ||||||  |||||| | |||||||||||||    
T  31933703 catcatttattaaatgaatctaaaaagtagaaatttgcttataatagtgaccggagggag 31933644  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 466
Target Start/End: Original strand, 33520625 - 33520668
Alignment:
Q  423 catcatttattaaataaatctaaaaagtcaaaatttatttataa 466  Q
    ||||||| ||||||| |||||||||||| |||||||||||||||    
T  33520625 catcattaattaaatgaatctaaaaagttaaaatttatttataa 33520668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 423 - 479
Target Start/End: Original strand, 20814613 - 20814669
Alignment:
Q  423 catcatttattaaataaatctaaaaagtcaaaatttatttataacaatgaccggagg 479  Q
    ||||||||||| ||| ||||||||||||  |||||| ||||||| | ||||||||||    
T  20814613 catcatttattgaatgaatctaaaaagtagaaatttgtttataatagtgaccggagg 20814669  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 423 - 475
Target Start/End: Original strand, 31864333 - 31864385
Alignment:
Q  423 catcatttattaaataaatctaaaaagtcaaaatttatttataacaatgaccg 475  Q
    ||||||||||||||| |||||||||| | ||  ||||||||||| ||||||||    
T  31864333 catcatttattaaatgaatctaaaaaataaatttttatttataataatgaccg 31864385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 9362163 - 9362204
Alignment:
Q  131 taactatatatgtttaaattgttgcgaattattcgtttaact 172  Q
    ||||||||||| |||| |||||||||| ||||||||||||||    
T  9362163 taactatatatatttacattgttgcgacttattcgtttaact 9362204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 313
Target Start/End: Complemental strand, 3306853 - 3306800
Alignment:
Q  260 ttttgcatagaaaaagatgtaattattacttcgagactactttgacttgtattt 313  Q
    |||||||||||||  ||||||||||||| || || |||||||||||||| ||||    
T  3306853 ttttgcatagaaagtgatgtaattattagtttgaaactactttgacttggattt 3306800  T

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