View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8433_low_5 (Length: 518)
Name: NF8433_low_5
Description: NF8433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8433_low_5 |
 | |
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| [»] scaffold0024 (1 HSPs) |
| | |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 428; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Complemental strand, 27587399 - 27586968
Alignment:
| Q |
1 |
gagttaagagtctgagtcagtgctggttcaaagtattagatttctttaccttccatatttgacagagatgcttgttaattgctagataacaccattttta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27587399 |
gagttaagagtctgagtcagtgctggttcaaagtattagatttctttaccttccatatttgacagagatgcttgttaattgctagataacaccattttta |
27587300 |
T |
|
| Q |
101 |
gttggtatgtcgtggtggcttctggcgtatacgtatttgattgtgttagagctgtgttattgacacaaaatctaacaacaatttcaacatcaatttggat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27587299 |
gttggtatgtcgtggtggcttctggcgtatacgtatttgattgtgttagagctgtgttattgacacaaaatctaacaacaatttcaacatcaatttggat |
27587200 |
T |
|
| Q |
201 |
tactttatgcaattcaaatatatggttaattacatttaatgaatataataaaattttgcaactcacgaacaatccacataacacccttatcagattgaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
27587199 |
tactttatgcaattcaaatatatggttaattacatttaatgaatataataaaattttgcaactcacgaacaacccacataacacccttatcagattgaaa |
27587100 |
T |
|
| Q |
301 |
cttcatcttatatcgtgtctcataatgttttagttttgtacatcaaaaagagaaatgaaattccataacttaatagattcaaagtctttttgctgaaaaa |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27587099 |
cttcatcttatatcgtgtctcataatgttttagttttgtacatcaaaaagagaaatgaaattccataacttaatagattcaaagtctttttgctgaaaaa |
27587000 |
T |
|
| Q |
401 |
ttaatttactattatctgatgaaatgaatctt |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
27586999 |
ttaatttactattatctgatgaaatgaatctt |
27586968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 280 - 432
Target Start/End: Complemental strand, 27713084 - 27712932
Alignment:
| Q |
280 |
aacacccttatcagattgaaacttcatcttatatcgtgtctcataatgttttagttttgtacatcaaaaagagaaatgaaattccataacttaatagatt |
379 |
Q |
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|
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
27713084 |
aacacccttaccagattgaaacttcatcttatatcatgtctcataatgttttagttttgtacatcaaaaagagaaatgaaattctataacttaatagaat |
27712985 |
T |
|
| Q |
380 |
caaagtctttttgctgaaaaattaatttactattatctgatgaaatgaatctt |
432 |
Q |
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| ||||||||||||||||||||||||||||| ||||| |||| |||||||||| |
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| T |
27712984 |
cgaagtctttttgctgaaaaattaatttacttttatccgatgtaatgaatctt |
27712932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 31291559 - 31291679
Alignment:
| Q |
24 |
tggttcaaagtattagatttctttaccttccatatttgacagagatgcttgttaattgctagataacaccatttttagttggtatgt-----cgtggtgg |
118 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||| |||||| |||| |||||||||||||| ||||||||| ||||| ||| ||| | || ||| |
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| T |
31291559 |
tggttctaggtattagatttctttaccttccatattggacagatatgcatgttaattgctagacaacaccattattagtgggtttgtccttccctgttgg |
31291658 |
T |
|
| Q |
119 |
cttctggcgtatacgtatttg |
139 |
Q |
| |
|
|||||||| |||||||||||| |
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|
| T |
31291659 |
cttctggcttatacgtatttg |
31291679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 27368764 - 27368680
Alignment:
| Q |
1 |
gagttaagagtctga-gtcagtgctggttcaaagtattagatttctttacctt-ccatatttgacagagatgcttgttaattgct |
83 |
Q |
| |
|
||||||||||||||| |||| ||||||||| ||||||| |||| ||| |||| |||||||||||||| |||| ||||||||||| |
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| T |
27368764 |
gagttaagagtctgatgtcactgctggttcttagtattaaattttttttcctttccatatttgacagatatgcatgttaattgct |
27368680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 27459111 - 27459027
Alignment:
| Q |
1 |
gagttaagagtctga-gtcagtgctggttcaaagtattagatttctttacctt-ccatatttgacagagatgcttgttaattgct |
83 |
Q |
| |
|
||||||||||||||| |||| ||||||||| ||||||| |||| ||| |||| |||||||||||||| |||| ||||||||||| |
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| T |
27459111 |
gagttaagagtctgatgtcactgctggttcttagtattaaattttttttcctttccatatttgacagatatgcatgttaattgct |
27459027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 339 - 417
Target Start/End: Complemental strand, 27607026 - 27606948
Alignment:
| Q |
339 |
tacatcaaaaagagaaatgaaattccataacttaatagattcaaagtctttttgctgaaaaattaatttactattatct |
417 |
Q |
| |
|
|||||||| |||||||||||||| | |||||||| |||| |||||| |||| || |||||||||| |||| |||||| |
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| T |
27607026 |
tacatcaagaagagaaatgaaatgctataacttattagaaagaaagtcatttttctcaaaaattaatatacttttatct |
27606948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 331 - 391
Target Start/End: Complemental strand, 27419265 - 27419205
Alignment:
| Q |
331 |
tagttttgtacatcaaaaagagaaatgaaattccataacttaatagattcaaagtcttttt |
391 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||| || ||| ||||||| |||||| |||| |
|
|
| T |
27419265 |
tagtttagtacatcaaaaatagaaatgaaattctatgactacatagattgaaagtcctttt |
27419205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 327 - 417
Target Start/End: Original strand, 5082740 - 5082829
Alignment:
| Q |
327 |
gttttagttttgtacatcaaaaagagaaatgaaattccataacttaatagattcaaagtctttttgctgaaaaattaatttactattatct |
417 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||| |||| |||||||| |||| |||| |||||| |
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| T |
5082740 |
gttttagttttgtaaatcaaaaagagaaatgaaattctttaacttaatagattgaaagtcctttt-ctgaaaaactaatatacttttatct |
5082829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 5078765 - 5078847
Alignment:
| Q |
22 |
gctggttcaaagtattagatttcttt--accttccatatttgacagagatgcttgttaattgctagataacaccatttttagt |
102 |
Q |
| |
|
|||||||||||||||||| ||| ||| ||||||||||||||||| | |||| | |||||||||||| ||| ||||| ||||| |
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|
| T |
5078765 |
gctggttcaaagtattaggtttttttttaccttccatatttgacaaatatgcatattaattgctagagaactccattattagt |
5078847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 240
Target Start/End: Complemental strand, 121438 - 121405
Alignment:
| Q |
207 |
atgcaattcaaatatatggttaattacatttaat |
240 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |
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|
| T |
121438 |
atgcaattcaaatatatgattaattacatttaat |
121405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 331 - 391
Target Start/End: Original strand, 68098 - 68158
Alignment:
| Q |
331 |
tagttttgtacatcaaaaagagaaatgaaattccataacttaatagattcaaagtcttttt |
391 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||| || ||| ||||||| |||||| |||| |
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|
| T |
68098 |
tagtttagtacatcaaaaatagaaatgaaattctatgactacatagattgaaagtcctttt |
68158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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