View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8433_low_7 (Length: 394)
Name: NF8433_low_7
Description: NF8433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8433_low_7 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 390; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 376433 - 376826
Alignment:
| Q |
1 |
tagattatacttttcttggcatgttaccatcactcctttggaacttgtggaatattcatgatttcttagctgcgttattgaagcaacatagaggtagtgg |
100 |
Q |
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| T |
376433 |
tagattatacttttcttggcatgttaccatcactcctttggaacttgtggaatattcatgatttcttagctgcgttattgaagcaacatagaggtagtgg |
376532 |
T |
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| Q |
101 |
tgagttcatgggaccttggtttaccaaaatgaattatttcatcactagtgaccccatgaatgtgcatcacataatgagcaagcgttttgacaattatgtg |
200 |
Q |
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| T |
376533 |
tgagttcatgggaccttggtttaccaaaatgaattatttcatcactagtgaccccatgaatgtgcatcacataatgagcaagcgttttgacaattatgtg |
376632 |
T |
|
| Q |
201 |
aagggtcatgaatttcatgagatatttgaagcctttggagatggaatattcaacgctgattcaaagacatggaaatataataggtctcttcttcactcta |
300 |
Q |
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| T |
376633 |
aagggtcatgaatttcatgagatatttgaagcctttggagatggaatattcaacgctgattcaaagacatggaaatataataggtctcttcttcactcta |
376732 |
T |
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| Q |
301 |
ttttcaaacaaagaagctttgaattgtttcaagagaaaatcattcaaaacaagttggagagaagtttgattcctttgttggaccatgtacaaca |
394 |
Q |
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| T |
376733 |
tttttaaacaaagaagctttgaattgtttcaagagaaaatcattcaaaacaagttggagagaagtttgattcctttgttggaccatgtacaaca |
376826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 100 - 394
Target Start/End: Complemental strand, 347964 - 347670
Alignment:
| Q |
100 |
gtgagttcatgggaccttggtttaccaaaatgaattatttcatcactagtgaccccatgaatgtgcatcacataatgagcaagcgttttgacaattatgt |
199 |
Q |
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| T |
347964 |
gtgagttcatgggaccttggtttaccaacatgaactatttggttactagtgaccctatgaacgtgcatcacatgatgagcaagtgttttgataattatgt |
347865 |
T |
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| Q |
200 |
gaagggtcatgaatttcatgagatatttgaagcctttggagatggaatattcaacgctgattcaaagacatggaaatataataggtctcttcttcactct |
299 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||| |||||||| |
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| T |
347864 |
aaagggtcaagaatttcatgagatttttgaagcctttggagatggaatattcaacgctgattcggagaaatggaaatacaataggtctctttttcactct |
347765 |
T |
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| Q |
300 |
attttcaaacaaagaagctttgaattgtttcaagagaaaatcattcaaaacaagttggagagaagtttgattcctttgttggaccatgtacaaca |
394 |
Q |
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| T |
347764 |
attttcaaacaaagagattttgaattgtttcaaaagaaaatcattcaaaacaagttggagagaagtttgattcctttgtttgaccatgtacaaca |
347670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 100 - 394
Target Start/End: Complemental strand, 356623 - 356329
Alignment:
| Q |
100 |
gtgagttcatgggaccttggtttaccaaaatgaattatttcatcactagtgaccccatgaatgtgcatcacataatgagcaagcgttttgacaattatgt |
199 |
Q |
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||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| || |||||||||| | |||||| ||||||||||||||| |
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| T |
356623 |
gtgagttcatgggaccttggtttaccagcatgaactatttggtcactagtgaccccatcaacttgcatcacatgttaagcaagtcttttgacaattatgt |
356524 |
T |
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| Q |
200 |
gaagggtcatgaatttcatgagatatttgaagcctttggagatggaatattcaacgctgattcaaagacatggaaatataataggtctcttcttcactct |
299 |
Q |
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| T |
356523 |
taagggtcatgaatatcatgagatatttgaagcctttggagatggaatattcaacactgattcggagacatggaaatacaataggtctctttttcactct |
356424 |
T |
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| Q |
300 |
attttcaaacaaagaagctttgaattgtttcaagagaaaatcattcaaaacaagttggagagaagtttgattcctttgttggaccatgtacaaca |
394 |
Q |
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| T |
356423 |
attttgaaaataagagattttgaaatgtttcaaaagaaaatcattcaaaacaagttggagaaaagtttgattcctttgttggaccatgtacaaca |
356329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 352
Target Start/End: Original strand, 336917 - 337000
Alignment:
| Q |
269 |
atggaaatataataggtctcttcttcactctattttcaaacaaagaagctttgaattgtttcaagagaaaatcattcaaaacaa |
352 |
Q |
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| T |
336917 |
atggaaatacaataggaatcttctccaatatctcttcaaacaaagaagctttgaagcttttcaagagaaaatcattcacaacaa |
337000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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