View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8433_low_8 (Length: 344)

Name: NF8433_low_8
Description: NF8433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8433_low_8
NF8433_low_8
[»] chr2 (16 HSPs)
chr2 (218-325)||(8417095-8417202)
chr2 (16-145)||(8417412-8417541)
chr2 (183-325)||(8412014-8412156)
chr2 (183-325)||(8417232-8417374)
chr2 (183-325)||(8434112-8434254)
chr2 (183-324)||(8375850-8375991)
chr2 (183-324)||(8439112-8439253)
chr2 (183-324)||(8395533-8395674)
chr2 (183-324)||(8405898-8406039)
chr2 (193-325)||(8431153-8431285)
chr2 (23-142)||(8439297-8439416)
chr2 (23-142)||(8375687-8375806)
chr2 (23-142)||(8412200-8412319)
chr2 (23-142)||(8434298-8434417)
chr2 (44-145)||(8395394-8395495)
chr2 (44-145)||(8406077-8406178)
[»] chr4 (2 HSPs)
chr4 (188-325)||(55336259-55336396)
chr4 (49-105)||(55331053-55331109)


Alignment Details
Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 218 - 325
Target Start/End: Complemental strand, 8417202 - 8417095
Alignment:
Q  218 atgcaggaagttgttgaagtgataaagagaaaagatgctgaagattataacaggcttggaaacatagctttgaaggtagacaagagtttagcaattgcag 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8417202 atgcaggaagttgttgaagtgataaagagaaaagatgctgaagattataacaggcttggaaacatagctttgaaggtagacaagagtttagcaattgcag 8417103  T
Q  318 ggccatta 325  Q
    ||||||||    
T  8417102 ggccatta 8417095  T

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Target: chr2; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 8417541 - 8417412
Alignment:
Q  16 tactgaagaagatgtcaaagaagctattgaaagagttttggcacttgataaagcatacccacttcctttattgggagtaatgcttgaaaagtaccctgct 115  Q
    |||| ||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||| |||||||||    
T  8417541 tactaaagaagatgtcaaagaagctattgaaaaagttttggcacatgataaagcacacccacttcctttattgggagcaatgcttgaaaattaccctgct 8417442  T
Q  116 aaatttgttcctgctaattggtggccttcc 145  Q
    ||||||||||||||||||||||||||||||    
T  8417441 aaatttgttcctgctaattggtggccttcc 8417412  T

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Target: chr2; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 183 - 325
Target Start/End: Complemental strand, 8412156 - 8412014
Alignment:
Q  183 tgaacaatggatggagtaaagaattagaaatggaaatgcaggaagttgttgaagtgataaagagaaaagatgctgaagattataacaggcttggaaacat 282  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||| |||||||||||| ||||||||||| |||| |||||||||||    
T  8412156 tgaacaatggatggagtgaagaattagaaatggaaatgcaggaagtcgctgaagtgatcaagagaaaagattctgaagattatgacagacttggaaacat 8412057  T
Q  283 agctttgaaggtagacaagagtttagcaattgcagggccatta 325  Q
    ||| ||||||||| |||||||||| ||||||||||||||||||    
T  8412056 agcgttgaaggtaaacaagagtttggcaattgcagggccatta 8412014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 183 - 325
Target Start/End: Complemental strand, 8417374 - 8417232
Alignment:
Q  183 tgaacaatggatggagtaaagaattagaaatggaaatgcaggaagttgttgaagtgataaagagaaaagatgctgaagattataacaggcttggaaacat 282  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| ||||||||||| |||| |||||||||||    
T  8417374 tgaacaacggatggagtaaagaattagaaatggaaatgcaggaagtcgctgaagtgatcaagagaaaagattctgaagattatgacagacttggaaacat 8417275  T
Q  283 agctttgaaggtagacaagagtttagcaattgcagggccatta 325  Q
    ||| ||||||||| |||||||||| ||||||||||||||||||    
T  8417274 agcgttgaaggtaaacaagagtttggcaattgcagggccatta 8417232  T

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Target: chr2; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 183 - 325
Target Start/End: Complemental strand, 8434254 - 8434112
Alignment:
Q  183 tgaacaatggatggagtaaagaattagaaatggaaatgcaggaagttgttgaagtgataaagagaaaagatgctgaagattataacaggcttggaaacat 282  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||| |||||||||||| ||||||||||| |||| |||||||||||    
T  8434254 tgaacaatggatggagtgaagaattagaaatggaaatgcaggaagtcgctgaagtgatcaagagaaaagattctgaagattatgacagacttggaaacat 8434155  T
Q  283 agctttgaaggtagacaagagtttagcaattgcagggccatta 325  Q
    ||| ||||||||| |||||||||| ||||||||||||||||||    
T  8434154 agcgttgaaggtaaacaagagtttggcaattgcagggccatta 8434112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 183 - 324
Target Start/End: Original strand, 8375850 - 8375991
Alignment:
Q  183 tgaacaatggatggagtaaagaattagaaatggaaatgcaggaagttgttgaagtgataaagagaaaagatgctgaagattataacaggcttggaaacat 282  Q
    |||| ||||| |||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||    
T  8375850 tgaataatgggtggagtaaagaattggaaatggaaatgagggaagttgttgaagtgataaagagaaaagacgctgaagattatgacagacttggaaacat 8375949  T
Q  283 agctttgaaggtagacaagagtttagcaattgcagggccatt 324  Q
    ||| ||||||||| |||||||||| |||||||||||||||||    
T  8375950 agcattgaaggtaaacaagagtttggcaattgcagggccatt 8375991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 183 - 324
Target Start/End: Complemental strand, 8439253 - 8439112
Alignment:
Q  183 tgaacaatggatggagtaaagaattagaaatggaaatgcaggaagttgttgaagtgataaagagaaaagatgctgaagattataacaggcttggaaacat 282  Q
    |||| ||||| |||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||    
T  8439253 tgaataatgggtggagtaaagaattggaaatggaaatgagggaagttgttgaagtgataaagagaaaagacgctgaagattatgacagacttggaaacat 8439154  T
Q  283 agctttgaaggtagacaagagtttagcaattgcagggccatt 324  Q
    ||| ||||||||| |||||||||| |||||||||||||||||    
T  8439153 agcattgaaggtaaacaagagtttggcaattgcagggccatt 8439112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 183 - 324
Target Start/End: Original strand, 8395533 - 8395674
Alignment:
Q  183 tgaacaatggatggagtaaagaattagaaatggaaatgcaggaagttgttgaagtgataaagagaaaagatgctgaagattataacaggcttggaaacat 282  Q
    |||| |||||||||||| ||||||| ||||||||||||  |||||||||||| ||| ||||  ||||||| |||||||||||| |||| |||||||||||    
T  8395533 tgaataatggatggagtgaagaattggaaatggaaatgagggaagttgttgacgtggtaaaacgaaaagacgctgaagattatgacagacttggaaacat 8395632  T
Q  283 agctttgaaggtagacaagagtttagcaattgcagggccatt 324  Q
    ||||||||||||| |||||||||| |||||||||||||||||    
T  8395633 agctttgaaggtaaacaagagtttggcaattgcagggccatt 8395674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 183 - 324
Target Start/End: Complemental strand, 8406039 - 8405898
Alignment:
Q  183 tgaacaatggatggagtaaagaattagaaatggaaatgcaggaagttgttgaagtgataaagagaaaagatgctgaagattataacaggcttggaaacat 282  Q
    |||| |||||||||||| ||||||| ||||||||||||  |||||||||||| ||| ||||  ||||||| |||||||||||| |||| |||||||||||    
T  8406039 tgaataatggatggagtgaagaattggaaatggaaatgagggaagttgttgacgtggtaaaacgaaaagacgctgaagattatgacagacttggaaacat 8405940  T
Q  283 agctttgaaggtagacaagagtttagcaattgcagggccatt 324  Q
    ||||||||||||| |||||||||| |||||||||||||||||    
T  8405939 agctttgaaggtaaacaagagtttggcaattgcagggccatt 8405898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 193 - 325
Target Start/End: Complemental strand, 8431285 - 8431153
Alignment:
Q  193 atggagtaaagaattagaaatggaaatgcaggaagttgttgaagtgataaagagaaaagatgctgaagattataacaggcttggaaacatagctttgaag 292  Q
    ||||||| ||||||||||||||||||||  ||| |||||||||||||||||||||||||| | |||||||||| | || |||||||||||||| ||||||    
T  8431285 atggagtgaagaattagaaatggaaatgagggatgttgttgaagtgataaagagaaaagacgttgaagattatgatagacttggaaacatagcattgaag 8431186  T
Q  293 gtagacaagagtttagcaattgcagggccatta 325  Q
    ||| |||||||||| ||||||||||||||||||    
T  8431185 gtaaacaagagtttggcaattgcagggccatta 8431153  T

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Target: chr2; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 23 - 142
Target Start/End: Complemental strand, 8439416 - 8439297
Alignment:
Q  23 gaagatgtcaaagaagctattgaaagagttttggcacttgataaagcatacccacttcctttattgggagtaatgcttgaaaagtaccctgctaaatttg 122  Q
    |||||||||||||| || || ||||  |||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||| | |||||||    
T  8439416 gaagatgtcaaagatgcaatggaaaaggttttggcacttgataaagcataccctcttcctttattgggagcaatgcttgaaaaatacccttcaaaatttg 8439317  T
Q  123 ttcctgctaattggtggcct 142  Q
      ||||||||||||||||||    
T  8439316 aacctgctaattggtggcct 8439297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 23 - 142
Target Start/End: Original strand, 8375687 - 8375806
Alignment:
Q  23 gaagatgtcaaagaagctattgaaagagttttggcacttgataaagcatacccacttcctttattgggagtaatgcttgaaaagtaccctgctaaatttg 122  Q
    |||||||||||||| || || ||||  ||||||||| |||||||||||||||| |||||||||||||||| |||||||||||| |||||| | |||||||    
T  8375687 gaagatgtcaaagatgcaatggaaaaggttttggcaattgataaagcataccctcttcctttattgggagcaatgcttgaaaaatacccttcaaaatttg 8375786  T
Q  123 ttcctgctaattggtggcct 142  Q
      ||||||||||||||||||    
T  8375787 aacctgctaattggtggcct 8375806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 23 - 142
Target Start/End: Complemental strand, 8412319 - 8412200
Alignment:
Q  23 gaagatgtcaaagaagctattgaaagagttttggcacttgataaagcatacccacttcctttattgggagtaatgcttgaaaagtaccctgctaaatttg 122  Q
    |||||||||||||| || || ||||  ||||||||| |||||||||||||||| |||||||||||||||| |||||||||||| |||||| | |||||||    
T  8412319 gaagatgtcaaagatgcaatggaaaaggttttggcaattgataaagcataccctcttcctttattgggagcaatgcttgaaaaatacccttcaaaatttg 8412220  T
Q  123 ttcctgctaattggtggcct 142  Q
      ||||||||||||||||||    
T  8412219 aacctgctaattggtggcct 8412200  T

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Target: chr2; HSP #14
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 23 - 142
Target Start/End: Complemental strand, 8434417 - 8434298
Alignment:
Q  23 gaagatgtcaaagaagctattgaaagagttttggcacttgataaagcatacccacttcctttattgggagtaatgcttgaaaagtaccctgctaaatttg 122  Q
    |||||||||||||| || || ||||  ||||||||| |||||||||||||||| |||||||||||||||| |||||||||||| |||||| | |||||||    
T  8434417 gaagatgtcaaagatgcaatggaaaaggttttggcaattgataaagcataccctcttcctttattgggagcaatgcttgaaaaatacccttcaaaatttg 8434318  T
Q  123 ttcctgctaattggtggcct 142  Q
      ||||||||||||||||||    
T  8434317 aacctgctaattggtggcct 8434298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 44 - 145
Target Start/End: Original strand, 8395394 - 8395495
Alignment:
Q  44 gaaagagttttggcacttgataaagcatacccacttcctttattgggagtaatgcttgaaaagtaccctgctaaatttgttcctgctaattggtggcctt 143  Q
    |||| ||||||||| ||||| |||||||| |||||||| ||||| |||| |||||||||||| |||||||| |||||||  ||||||| |||||||||||    
T  8395394 gaaaaagttttggcccttgacaaagcatatccacttccattattaggagcaatgcttgaaaaataccctgcaaaatttgagcctgctacttggtggcctt 8395493  T
Q  144 cc 145  Q
    ||    
T  8395494 cc 8395495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 44 - 145
Target Start/End: Complemental strand, 8406178 - 8406077
Alignment:
Q  44 gaaagagttttggcacttgataaagcatacccacttcctttattgggagtaatgcttgaaaagtaccctgctaaatttgttcctgctaattggtggcctt 143  Q
    |||| ||||||||| ||||| |||||||| |||||||| ||||| |||| |||||||||||| |||||||| |||||||  ||||||| |||||||||||    
T  8406178 gaaaaagttttggcccttgacaaagcatatccacttccattattaggagcaatgcttgaaaaataccctgcaaaatttgagcctgctacttggtggcctt 8406079  T
Q  144 cc 145  Q
    ||    
T  8406078 cc 8406077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 188 - 325
Target Start/End: Complemental strand, 55336396 - 55336259
Alignment:
Q  188 aatggatggagtaaagaattagaaatggaaatgcaggaagttgttgaagtgataaagagaaaagatgctgaagattataacaggcttggaaacatagctt 287  Q
    |||||||||||| ||||||||||||||||||||  ||||||| |||||||  ||||||| |||||   |||||| ||| | || |||||||| ||||| |    
T  55336396 aatggatggagtgaagaattagaaatggaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcat 55336297  T
Q  288 tgaaggtagacaagagtttagcaattgcagggccatta 325  Q
    ||||| |  |||||||| | ||||| ||||| ||||||    
T  55336296 tgaagattaacaagagtatggcaatagcaggtccatta 55336259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 55331109 - 55331053
Alignment:
Q  49 agttttggcacttgataaagcatacccacttcctttattgggagtaatgcttgaaaa 105  Q
    ||||||||||||||| ||||| || |||||||||||||| || || |||||||||||    
T  55331109 agttttggcacttgacaaagcttatccacttcctttattaggtgttatgcttgaaaa 55331053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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