View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8433_low_9 (Length: 329)
Name: NF8433_low_9
Description: NF8433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8433_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 3234181 - 3234490
Alignment:
| Q |
1 |
gtaaagtacaacaactacgtcgaaggcaagttgttgtagcttagttttgagatgttgattgcggcaccaatgttgctatgtaggtggttgtagctttgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3234181 |
gtaaagtacaacaactacgtcgaaggcaagttgttgtagcttagttttgagatgttgattgcggcaccaatgttgctatgtaggtggttgtagctttgtt |
3234280 |
T |
|
| Q |
101 |
catctccggtgattttttctctcttaggggatattttttacttgcatcttatnnnnnnntcggaaaggaatatgcattcttcacggcttcgtgcaattca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3234281 |
catctccggtgattttttctctcttaggggatattttttacttgcatcttatataaaaatgggaaaggaatatgcattcttcacggcttcgtgcaattca |
3234380 |
T |
|
| Q |
201 |
agggctgtgctatagttacaagcatttaaatttactcactcgaggataaaatataaacaaaaagatagtcgaaaaatttatc--tgtggattaaattttt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3234381 |
agggctgtgctatagttacaagcatttaaatttactcactcgaggataaaatataaacaaaaagatagtcgaaaaatttatctatgtggattaaattttt |
3234480 |
T |
|
| Q |
299 |
aaccacacga |
308 |
Q |
| |
|
|||||||||| |
|
|
| T |
3234481 |
aaccacacga |
3234490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University