View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8435_high_3 (Length: 317)
Name: NF8435_high_3
Description: NF8435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8435_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 267
Target Start/End: Original strand, 10047191 - 10047438
Alignment:
| Q |
20 |
ctaaggaaagtgatttggtataccgtgtcgaaaagaatggagggattgtaaatgctgaaactggggtgaagtcagatattttgattcagataccaaatgg |
119 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10047191 |
ctaagggaagtgatttggtataccgtgtcgaaaagaatggagggattgtaaatgctgaaactggggtgaagtcagatattttgattcagataccaaatgg |
10047290 |
T |
|
| Q |
120 |
accaaaaattgtcggtgaaaatggatatgaggtcgttggcgaagatgaaatggaagagtaagctttatatagtccttgaatgtatcgaaattgcaaacat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10047291 |
accaaaaattgtcggtgaaaatggatatgaggtcattggcgatgatgaaatggaagagtaagctttatatagtccttgaatgtatcgaaattgcaaacat |
10047390 |
T |
|
| Q |
220 |
atcgcacaagtatctcttttagcagttgttttggtccacaaaatggct |
267 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10047391 |
atcgcacaagtatctcttttatcagttgttttggtccacaaaatggct |
10047438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 38709154 - 38709321
Alignment:
| Q |
20 |
ctaaggaaagtgatttggtataccgtgtcgaaaagaatggagggattgtaaatgctgaaactggggtgaagtcagatattttgattcagataccaaatgg |
119 |
Q |
| |
|
|||||| |||||| ||| ||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||| | | |
|
|
| T |
38709154 |
ctaagggaagtgacttgtcataccgtgtggaaaagaatggagagattgttaatgctgaaactggggtgaagtcagatattttgatacagataccaacttg |
38709253 |
T |
|
| Q |
120 |
accaaaaattgtcggtgaaaatggatatgaggtcgttggcgaagatgaaatggaagagtaagctttat |
187 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||| || ||||||| |||||| |||||||||| |
|
|
| T |
38709254 |
accaaaaactgtcggtgaaaatggatatgaggtcattggtgatgatgaaacggaagattaagctttat |
38709321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 272 - 317
Target Start/End: Original strand, 10048504 - 10048549
Alignment:
| Q |
272 |
atgaattgttcatgaaccttaggtttttagcaagctaattctcatc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10048504 |
atgaattgttcatgaaccttaggtttttaacaagctaattctcatc |
10048549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 38709368 - 38709431
Alignment:
| Q |
189 |
tagtccttgaatgtatcgaaattgcaaacatatcgcacaagtatctcttttagcagttgttttgg |
253 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||| ||||||||||||||||| |||| |||||| |
|
|
| T |
38709368 |
tagttcttgaatgcatcgaaattgcaaacatat-tcacaagtatctcttttattagttcttttgg |
38709431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 45468883 - 45468990
Alignment:
| Q |
20 |
ctaaggaaagtgatttggtataccgtgtcgaaaagaatggagggattgtaaatgctgaaactggggtgaagtcagatattttgattcagataccaaatgg |
119 |
Q |
| |
|
|||||| ||| ||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
45468883 |
ctaagggaagcgatttggcataccgtgtagaaaagaatggagggattgttaatgctgaaactggggtgaagtctgatatattgattcagataccgaatgg |
45468982 |
T |
|
| Q |
120 |
accaaaaa |
127 |
Q |
| |
|
||| |||| |
|
|
| T |
45468983 |
acctaaaa |
45468990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 739617 - 739517
Alignment:
| Q |
27 |
aagtgatttggtataccgtgtcgaaaagaatggagggattgtaaatgctgaaactggggtgaagtcagatattttgattcagataccaaatggaccaaaa |
126 |
Q |
| |
|
||||| ||||||| |||||| ||||| | || || |||||| |||||||||| ||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
739617 |
aagtggtttggtacaccgtgcagaaaatagtgaagagattgttaatgctgaaatcggggtgaagtcggatattttgattcagataacaaatggaccaaaa |
739518 |
T |
|
| Q |
127 |
a |
127 |
Q |
| |
|
| |
|
|
| T |
739517 |
a |
739517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 5959839 - 5959771
Alignment:
| Q |
187 |
tatagtccttgaatgtatcgaaattgcaaacatatcgcacaagtatctcttttagcagttgttttggtcc |
256 |
Q |
| |
|
||||||||| |||||||||||||||||||| | ||| ||||| | ||||||||| ||||| ||||||||| |
|
|
| T |
5959839 |
tatagtcctagaatgtatcgaaattgcaaatacatc-cacaaatgtctcttttatcagttattttggtcc |
5959771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 14242638 - 14242670
Alignment:
| Q |
187 |
tatagtccttgaatgtatcgaaattgcaaacat |
219 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
|
|
| T |
14242638 |
tatagtccttaaatgtatcgaaattgcaaacat |
14242670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University