View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8435_high_4 (Length: 317)
Name: NF8435_high_4
Description: NF8435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8435_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 303
Target Start/End: Original strand, 7423080 - 7423364
Alignment:
| Q |
19 |
tcttccaattgtccaagtattgacaagaattagagtcccttttgggatatcataaccatcaacattgcaatcctcactagcttctcttggcactaacaat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7423080 |
tcttccaattgtccaagtattgacaagaattagagtcccttttgggatatcataaccatcaacattgcaatcctcactagcttctcttggcactaacaat |
7423179 |
T |
|
| Q |
119 |
ggtgctgcaggatgaagcctcattgtttctttagcaattgcaaaaacataaggtaaattgacaatgtctttctcttcaacccatctatctcttcctatta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7423180 |
ggtgctgcaggatgaagcctcattgtttctttagcaattgcaaaaacataaggtaaattgacaatgtctttctcttcaacccatctatctcttcctatta |
7423279 |
T |
|
| Q |
219 |
ctttgtctagttcctccgtagctctcttgataatctctggctttttcacaagctcggagattgcccattcaactgtaactgtaga |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
7423280 |
ctttgtctagttcctccgtagctctcttgataatctctggctttttcacaagctcggagattgcccattctactgttactgtaga |
7423364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 19 - 288
Target Start/End: Original strand, 7429489 - 7429758
Alignment:
| Q |
19 |
tcttccaattgtccaagtattgacaagaattagagtcccttttgggatatcataaccatcaacattgcaatcctcactagcttctcttggcactaacaat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||| | |
|
|
| T |
7429489 |
tcttccaattgtccaagtattgacaagaatcatagtcccttttggtatatcataaccatcaacattgcaattctcagtagcttctcttggcactaacatt |
7429588 |
T |
|
| Q |
119 |
ggtgctgcaggatgaagcctcattgtttctttagcaattgcaaaaacataaggtaaattgacaatgtctttctcttcaacccatctatctcttcctatta |
218 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7429589 |
ggtgtcacaggatgaagcctcattgtttctttagcaattgcaaaaacataaggtaaattgacaatgtctttctcttcaacccatctatctctccctatta |
7429688 |
T |
|
| Q |
219 |
ctttgtctagttcctccgtagctctcttgataatctctggctttttcacaagctcggagattgcccattc |
288 |
Q |
| |
|
|| | ||||||||||| |||||||||||||||||||||||| ||||||||||||| || ||||||||||| |
|
|
| T |
7429689 |
ctctatctagttcctctgtagctctcttgataatctctggccttttcacaagctcagaaattgcccattc |
7429758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 19 - 299
Target Start/End: Original strand, 7415421 - 7415701
Alignment:
| Q |
19 |
tcttccaattgtccaagtattgacaagaattagagtcccttttgggatatcataaccatcaacattgcaatcctcactagcttctcttggcactaacaat |
118 |
Q |
| |
|
|||| |||||||||||||||||||||||| || ||||||||| || ||||| ||||||||||| ||||||||||| |||||||||| ||||||||| ||| |
|
|
| T |
7415421 |
tcttgcaattgtccaagtattgacaagaactatagtccctttgggaatatcgtaaccatcaactttgcaatcctctctagcttctcgtggcactaaaaat |
7415520 |
T |
|
| Q |
119 |
ggtgctgcaggatgaagcctcattgtttctttagcaattgcaaaaacataaggtaaattgacaatgtctttctcttcaacccatctatctcttcctatta |
218 |
Q |
| |
|
||||| | ||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
7415521 |
ggtgccacgggatgtagcctcattgtttctttagcaattgcgtaaacataaggtaaattcgcaatgtctttctcttcaacccatctatcttttcctatca |
7415620 |
T |
|
| Q |
219 |
ctttgtctagttcctccgtagctctcttgataatctctggctttttcacaagctcggagattgcccattcaactgtaactg |
299 |
Q |
| |
|
|| | ||||| ||||| || ||| |||||| |||||||| ||| | || |||||||||||||||||||| ||||| |||| |
|
|
| T |
7415621 |
ctctatctagctcctcggttgctttcttgaagatctctggttttctaaccagctcggagattgcccattctactgttactg |
7415701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University