View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8435_low_2 (Length: 404)
Name: NF8435_low_2
Description: NF8435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8435_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 388
Target Start/End: Complemental strand, 45693633 - 45693263
Alignment:
| Q |
18 |
agatttctcatatatttttgtttttgctgacttgatatttcttaggcggataaagcttcaatgctagatgaggcaattgagtatcttaaatcacttcaac |
117 |
Q |
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| T |
45693633 |
agatttctcatatatttttgtttttgctgacttgatatttcttaggcggataaagcttcaatgctggatgaggcaattgagtatcttaaatcacttcaac |
45693534 |
T |
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| Q |
118 |
tccaactgcaagtattctttctcttcccttttacattttcccttcaatcctttgaattttgatatttcacattatattatatccattctaacgcgatatt |
217 |
Q |
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| T |
45693533 |
tccaactgcaagtattctttctcttcccttttacattttcccttcaatcctttgaattttgatatttcacattatattatatccattctaatgcgatatt |
45693434 |
T |
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| Q |
218 |
ttttctgatctttttacacagatcatgtcaatgggaggtggtggtttatacatgcctatgatgttaccagcaggaatgcagcacatgcatgcggctcaca |
317 |
Q |
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| T |
45693433 |
ttttctgatctttttacacagatcatgtcaatgggaggtggtggtttatacatgcctatgacgttaccagcaggaatgcagcacatgcatgcggctcaca |
45693334 |
T |
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| Q |
318 |
tgtttcccttttcacccatgagtgttgccatgcaaatgggattgggggtgcctcaatttgaaggaactcac |
388 |
Q |
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| T |
45693333 |
tgtttcccttttcacccatgagtgttgccatgcaaatgggattgggggtgcctcaatttcaaggaactcac |
45693263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 37935686 - 37935757
Alignment:
| Q |
60 |
taggcggataaagcttcaatgctagatgaggcaattgagtatcttaaatcacttcaactccaactgcaagta |
131 |
Q |
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| T |
37935686 |
taggtggataaagcttctatgctggatgaggcaattgagtatctaaaaacacttcagctccaagttcaagta |
37935757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 309
Target Start/End: Original strand, 37935835 - 37935913
Alignment:
| Q |
231 |
ttacacagatcatgtcaatgggaggtggtggtttatacatgcct---atgatgttaccagcaggaatgcagcacatgcatgc |
309 |
Q |
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|||| ||||| ||||||||||||| |||| ||||| |||||| ||||||||||| || |||||||||||||||||||| |
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| T |
37935835 |
ttacgcagatgatgtcaatgggagctggt---ttatatatgcctcaaatgatgttacctgctggaatgcagcacatgcatgc |
37935913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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