View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8435_low_5 (Length: 295)
Name: NF8435_low_5
Description: NF8435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8435_low_5 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 10571030 - 10571325
Alignment:
| Q |
1 |
ccccgacaaggacaccaaaattactcaacaaaagctccttctttttgtcacaaacaacattagatttttggcctagctacaagtaacatgtgcagtgtat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10571030 |
ccccgacaaggacaccaaaattactcaacaaaagctccttctttttgtcacaaacaacattagatttttggcctagctacaagtaacatgtgcattgtat |
10571129 |
T |
|
| Q |
101 |
ggaaaaacagtacaaaccaagaaaacacaagacagaatagtaaatactactaaatagaatcgtgaaacag-aaaatgaaagtaacctttaacttttcaga |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10571130 |
ggaaaaacagtacaaaccaagaaaacacaagacagaatagtaaatactactaaatataatcgtgaaacagaaaaatgaaagtaacctttaacttttcaga |
10571229 |
T |
|
| Q |
200 |
atcttgaaaaggaaaattagtacactggttctcaaaagacagcaccacctaggccataattaagtgatactcaactaacatatatactagtataag |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
10571230 |
atcttgaaaaggaaaattagtacactggttctcaaaagacagcaccacctaggccataattaagtgatgctcaaccaacatatatactagtataag |
10571325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University