View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8435_low_7 (Length: 248)
Name: NF8435_low_7
Description: NF8435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8435_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 29089921 - 29089687
Alignment:
| Q |
1 |
ctcttccaaatcgctggccaatttcggcggtattcattcccttacaatgcaaacaatgcaatatcttaccaagcttacagattacagcaacgtgctttct |
100 |
Q |
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| T |
29089921 |
ctcttccaaatcgctggcgaatttcggcggtattcattcccttacaacgcaaacaatgcaatatcttaccaagcttacagattacagcaacgtgctttct |
29089822 |
T |
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| Q |
101 |
gaaatattcttcgacattcctccgtcgttgaattccccattgccagaatcttacttatacagtccagaatcatccaacaactcgacggaaattgaaactg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29089821 |
gaaatattcttcgacattcctccgtcgttgaattccccattgccagaatcttacttatacagtccagaatcatccaactactcgacggaaattgaaactg |
29089722 |
T |
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| Q |
201 |
aattttccattcgaatagcgtggttgattctagtt |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
29089721 |
aattttccattcgaatagcgtggttgattctagtt |
29089687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 231
Target Start/End: Complemental strand, 29104181 - 29103952
Alignment:
| Q |
2 |
tcttccaaatcgctggccaatttcggcggtattcattcccttacaatgcaaacaatgcaatatcttaccaagcttacagattacagcaacgtgctttctg |
101 |
Q |
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||||||||||| ||| ||||||||||| |||||||||| ||| | |||||||||| ||||| | | ||| ||||||||||||||||||| |||| |
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| T |
29104181 |
tcttccaaatcagcggcaaatttcggcggagttcattccctgacagaggaaacaatgcagtatctcattactcttgcagattacagcaacgtgctctctg |
29104082 |
T |
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| Q |
102 |
aaatattcttcgacattcctccgtcgttgaattccccattgccagaatcttacttatacagtccagaatcatccaacaactcgacggaaattgaaactga |
201 |
Q |
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| T |
29104081 |
agatattctttgacattcctcctctgtcgaagtcaccgttgccagaatcttacttatacagtccagaatcatcaaacaatactcctgaaatggagactgg |
29103982 |
T |
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| Q |
202 |
attttccattcgaatagcgtggttgattct |
231 |
Q |
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||||||| |||||||||||||| ||||||| |
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| T |
29103981 |
attttccgttcgaatagcgtggctgattct |
29103952 |
T |
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