View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8435_low_9 (Length: 238)

Name: NF8435_low_9
Description: NF8435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8435_low_9
NF8435_low_9
[»] chr3 (3 HSPs)
chr3 (1-224)||(16005329-16005552)
chr3 (43-85)||(6136379-6136421)
chr3 (42-85)||(13006102-13006145)
[»] chr2 (3 HSPs)
chr2 (36-85)||(19245866-19245915)
chr2 (42-85)||(8428499-8428542)
chr2 (42-80)||(34167571-34167609)
[»] chr7 (2 HSPs)
chr7 (42-85)||(4575007-4575050)
chr7 (46-85)||(17809005-17809044)
[»] chr5 (2 HSPs)
chr5 (36-85)||(27339990-27340039)
chr5 (49-85)||(13341591-13341627)
[»] chr8 (1 HSPs)
chr8 (42-85)||(26879787-26879830)
[»] chr6 (2 HSPs)
chr6 (46-85)||(20432406-20432445)
chr6 (49-85)||(33593044-33593080)
[»] chr4 (3 HSPs)
chr4 (42-85)||(7045221-7045264)
chr4 (51-85)||(10394887-10394921)
chr4 (42-78)||(5943068-5943104)
[»] chr1 (2 HSPs)
chr1 (42-85)||(16434786-16434829)
chr1 (42-85)||(25146577-25146620)


Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 16005552 - 16005329
Alignment:
Q  1 cccttgtgcaacacggggaagaacttcatcgcctaaagttcaaagggaatagcaaaatcaaaaatagtaaaatcgcaatcaaaatgatgaattttgggat 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||| |||| ||||||||||||||||||| ||||||||||||||    
T  16005552 cccttgtgcaacacggggaagaacttcatcgcctaaaattcaaggggaataacaaaatcataaatcgtaaaatcgcaatcaaaatcatgaattttgggat 16005453  T
Q  101 ttaagttgggatagttaaaacctaatatgcacaaatcaaagtacctcttccaaaagcttttgcataaccgatttcatatccttcttcataagcagcatcg 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16005452 ttaagttgggatagttaaaacctaatatgcaaaaatcaaagtacctcttccaaaagcttttgcataaccgatttcatatccttcttcataagcagcatcg 16005353  T
Q  201 tttctttgagaagtggtattaagt 224  Q
    ||||||||||||||||||||||||    
T  16005352 tttctttgagaagtggtattaagt 16005329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 6136379 - 6136421
Alignment:
Q  43 aagggaatagcaaaatcaaaaatagtaaaatcgcaatcaaaat 85  Q
    ||||||| ||||||||||||||| |||||||||||||||||||    
T  6136379 aagggaaaagcaaaatcaaaaatcgtaaaatcgcaatcaaaat 6136421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 85
Target Start/End: Complemental strand, 13006145 - 13006102
Alignment:
Q  42 aaagggaatagcaaaatcaaaaatagtaaaatcgcaatcaaaat 85  Q
    |||||||||||||||||  ||||| |||||||||||||||||||    
T  13006145 aaagggaatagcaaaattgaaaatcgtaaaatcgcaatcaaaat 13006102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 19245915 - 19245866
Alignment:
Q  36 aagttcaaagggaatagcaaaatcaaaaatagtaaaatcgcaatcaaaat 85  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  19245915 aagttgaaagggaatagcaaaatcaaaaatcgtaaaatcgcaatcaaaat 19245866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 85
Target Start/End: Complemental strand, 8428542 - 8428499
Alignment:
Q  42 aaagggaatagcaaaatcaaaaatagtaaaatcgcaatcaaaat 85  Q
    ||||||||||| ||||||||||||  ||||||||||||||||||    
T  8428542 aaagggaatagaaaaatcaaaaattctaaaatcgcaatcaaaat 8428499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 34167609 - 34167571
Alignment:
Q  42 aaagggaatagcaaaatcaaaaatagtaaaatcgcaatc 80  Q
    |||||||||||||||||| ||||| ||||||||||||||    
T  34167609 aaagggaatagcaaaatcgaaaatcgtaaaatcgcaatc 34167571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 85
Target Start/End: Complemental strand, 4575050 - 4575007
Alignment:
Q  42 aaagggaatagcaaaatcaaaaatagtaaaatcgcaatcaaaat 85  Q
    ||||||||||| |||||||||||| |||||||||||||||||||    
T  4575050 aaagggaatagtaaaatcaaaaatcgtaaaatcgcaatcaaaat 4575007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 85
Target Start/End: Original strand, 17809005 - 17809044
Alignment:
Q  46 ggaatagcaaaatcaaaaatagtaaaatcgcaatcaaaat 85  Q
    |||||||||||||| ||||| |||||||||||||||||||    
T  17809005 ggaatagcaaaatcgaaaatcgtaaaatcgcaatcaaaat 17809044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 27339990 - 27340039
Alignment:
Q  36 aagttcaaagggaatagcaaaatcaaaaatagtaaaatcgcaatcaaaat 85  Q
    ||||| |||||||||||||||||| ||||| || ||||||||||||||||    
T  27339990 aagttgaaagggaatagcaaaatcgaaaatcgtgaaatcgcaatcaaaat 27340039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 13341591 - 13341627
Alignment:
Q  49 atagcaaaatcaaaaatagtaaaatcgcaatcaaaat 85  Q
    |||||||||||||||||  ||||||||||||||||||    
T  13341591 atagcaaaatcaaaaattttaaaatcgcaatcaaaat 13341627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 85
Target Start/End: Complemental strand, 26879830 - 26879787
Alignment:
Q  42 aaagggaatagcaaaatcaaaaatagtaaaatcgcaatcaaaat 85  Q
    |||||||  ||||||||||||||| |||||||||||||||||||    
T  26879830 aaagggatcagcaaaatcaaaaatcgtaaaatcgcaatcaaaat 26879787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 85
Target Start/End: Original strand, 20432406 - 20432445
Alignment:
Q  46 ggaatagcaaaatcaaaaatagtaaaatcgcaatcaaaat 85  Q
    |||||||||||||| ||||| |||||||||||||||||||    
T  20432406 ggaatagcaaaatcgaaaatcgtaaaatcgcaatcaaaat 20432445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 33593044 - 33593080
Alignment:
Q  49 atagcaaaatcaaaaatagtaaaatcgcaatcaaaat 85  Q
    |||||||||||||||||  ||||||||||||||||||    
T  33593044 atagcaaaatcaaaaatcataaaatcgcaatcaaaat 33593080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 85
Target Start/End: Complemental strand, 7045264 - 7045221
Alignment:
Q  42 aaagggaatagcaaaatcaaaaatagtaaaatcgcaatcaaaat 85  Q
    |||||||| |||||||||||||||  ||||||||||||||||||    
T  7045264 aaagggaagagcaaaatcaaaaatcataaaatcgcaatcaaaat 7045221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 10394921 - 10394887
Alignment:
Q  51 agcaaaatcaaaaatagtaaaatcgcaatcaaaat 85  Q
    ||||||||||||||| |||||||||||||||||||    
T  10394921 agcaaaatcaaaaatcgtaaaatcgcaatcaaaat 10394887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 5943068 - 5943104
Alignment:
Q  42 aaagggaatagcaaaatcaaaaatagtaaaatcgcaa 78  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  5943068 aaagggaagagcaaaatcaaaaatcgtaaaatcgcaa 5943104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 85
Target Start/End: Complemental strand, 16434829 - 16434786
Alignment:
Q  42 aaagggaatagcaaaatcaaaaatagtaaaatcgcaatcaaaat 85  Q
    |||||||||||||||||| ||||| ||||||| |||||||||||    
T  16434829 aaagggaatagcaaaatcgaaaatcgtaaaattgcaatcaaaat 16434786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 25146577 - 25146620
Alignment:
Q  42 aaagggaatagcaaaatcaaaaatagtaaaatcgcaatcaaaat 85  Q
    ||||||||||||||||||  |||| |||||||||||||||||||    
T  25146577 aaagggaatagcaaaatcggaaatcgtaaaatcgcaatcaaaat 25146620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University