View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8436_high_4 (Length: 457)
Name: NF8436_high_4
Description: NF8436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8436_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 8451857 - 8452295
Alignment:
| Q |
1 |
atattatatcttacaatatattcagtgagcagaggtgaaacaagggacacacaaatgtggcatacctcgagtttctgcattttctttgtcacttcatgct |
100 |
Q |
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| T |
8451857 |
atattatatcttataatatattcagtgagcagaggtgtaacaagggacacacaaatgtggcatacctcgagtttctgcattttctttgtcacttcatgct |
8451956 |
T |
|
| Q |
101 |
tgaggctctcaatatcctataaaaatgcatgcgtgaagattaatcaagtaacttatttattacgaagtaattcaaaataaaa--agtagagcgaaaaaga |
198 |
Q |
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| T |
8451957 |
tgaggctctcaatatcctataaaaatgcatgcgtgaagattaatcaagtaacttatt----acgaagtaattcaaaaaaaaaaaagtagagcgaaaaaga |
8452052 |
T |
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| Q |
199 |
atttgtatagtacattctgacgaagtctaatagtaatacaattaggttgtcagactgtgcaaaattggtttcaaaacaagttataaggtggctatataaa |
298 |
Q |
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| T |
8452053 |
atttgtatagtacattctgtcgaagtctaatagtgatacaattaggttgtcagactgtgcacaattggtttcaaaacaagttataaggtggctatataaa |
8452152 |
T |
|
| Q |
299 |
tgtgaagagaattttcaattgaataagctattgttttaagactaagtatgaaaagaaaactacctgtcctgcccaaccatcaacaacaaaaacatccaat |
398 |
Q |
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| T |
8452153 |
tgtgaagagaattttcaattgaataagctattgttttaagactaagtatgaaaagaaaactacctggcctgcccaaccatcaacaacaaaaacatccaat |
8452252 |
T |
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| Q |
399 |
gaatatccatccaatgtggaaaaggcatgtgcttcttgaatgt |
441 |
Q |
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| T |
8452253 |
gaatatccatccaatgtggaaaaggcatgtgcttcttgaatgt |
8452295 |
T |
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Back To:
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Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 367 - 441
Target Start/End: Original strand, 53663154 - 53663228
Alignment:
| Q |
367 |
ctgcccaaccatcaacaacaaaaacatccaatgaatatccatccaatgtggaaaaggcatgtgcttcttgaatgt |
441 |
Q |
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| T |
53663154 |
ctgcccaaccaccaacaacaaaaacatccaatgaatagccatccaatgtcgaaaaagcatgtgcttcttgaatgt |
53663228 |
T |
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