View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8436_high_9 (Length: 266)

Name: NF8436_high_9
Description: NF8436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8436_high_9
NF8436_high_9
[»] chr5 (1 HSPs)
chr5 (19-245)||(41150843-41151074)
[»] chr8 (3 HSPs)
chr8 (114-203)||(44061806-44061896)
chr8 (115-203)||(12241162-12241251)
chr8 (60-160)||(2952596-2952696)
[»] chr1 (4 HSPs)
chr1 (115-156)||(41070912-41070953)
chr1 (123-193)||(40781447-40781518)
chr1 (133-203)||(41062182-41062252)
chr1 (115-203)||(47642499-47642588)
[»] chr6 (3 HSPs)
chr6 (123-202)||(10375752-10375831)
chr6 (115-203)||(12588266-12588357)
chr6 (137-204)||(10053050-10053118)
[»] chr3 (2 HSPs)
chr3 (62-156)||(8502831-8502927)
chr3 (115-155)||(34456880-34456920)
[»] scaffold0034 (1 HSPs)
scaffold0034 (115-155)||(101841-101881)


Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 41150843 - 41151074
Alignment:
Q  19 agtttatcaaaatagagaaatgacatttgtaa------tttattgcaatttttgaaataattctctcttttatactcttattgtgttattactctctccc 112  Q
    ||||||||||||||||||||||||||| ||||      ||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||     
T  41150843 agtttatcaaaatagagaaatgacattcgtaagatcattttattgcaatttttaaaacaattctctcttttatactcttattgagttattactctctcct 41150942  T
Q  113 cgttgctttaatttttatgtcaatacctatatttctttgtatatattttttgtccaataaattatccaaaaaatagttgttgaaataacatactatatcg 212  Q
    ||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  41150943 cgttgctttgatttttatgttaatacctatatttatttgtatatattttttgtccaataaattat-caaaaaaaagttgttgaaataacatactatatcg 41151041  T
Q  213 tcaaaatgatatatcaatctcccttattctttt 245  Q
    |||||||||||||||||||||||||||||||||    
T  41151042 tcaaaatgatatatcaatctcccttattctttt 41151074  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 203
Target Start/End: Original strand, 44061806 - 44061896
Alignment:
Q  114 gttgctttaatttttatgtcaatacctatatttctttgtatatattttttgtccaataaattatc-caaaaaatagttgttgaaataacat 203  Q
    |||||||| |||||| ||||| || ||| |||||||||||||  ||  |||||||| |||||||| ||| ||||||||||| |||||||||    
T  44061806 gttgctttgatttttgtgtcactatctaaatttctttgtataatttggttgtccaacaaattatcacaagaaatagttgttcaaataacat 44061896  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 203
Target Start/End: Original strand, 12241162 - 12241251
Alignment:
Q  115 ttgctttaatttttatgtcaatacctatatttctttgtatatattttttgtccaataaattatc-caaaaaatagttgttgaaataacat 203  Q
    ||||||| |||||||||||| || ||| |||||||||||||   |  |||||||| |||||||| || |||| ||||||| |||||||||    
T  12241162 ttgctttgatttttatgtcactatctaaatttctttgtataatgtggttgtccaacaaattatcacataaaaaagttgttcaaataacat 12241251  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 160
Target Start/End: Complemental strand, 2952696 - 2952596
Alignment:
Q  60 atttttgaaataattctctcttttatactcttattgtgttattactctctccccgttgctttaatttttatgtcaatacctatatttctttgtatatatt 159  Q
    |||||||||| ||||  |||| |||||||||  | || || |||||||||| |  || ||||  |||| |||||||||| ||||||||||||||| ||||    
T  2952696 atttttgaaacaattgcctctcttatactctcgtcgttttcttactctctcactatttctttggttttcatgtcaatacttatatttctttgtatgtatt 2952597  T
Q  160 t 160  Q
    |    
T  2952596 t 2952596  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 156
Target Start/End: Original strand, 41070912 - 41070953
Alignment:
Q  115 ttgctttaatttttatgtcaatacctatatttctttgtatat 156  Q
    ||||||| ||||||||||||||||||| ||||||||||||||    
T  41070912 ttgctttgatttttatgtcaatacctaaatttctttgtatat 41070953  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 193
Target Start/End: Original strand, 40781447 - 40781518
Alignment:
Q  123 atttttatgtcaatacctatatttctttgtatatattttttgtccaataaattatc-caaaaaatagttgtt 193  Q
    |||||| ||| ||||  ||||||||||||||||| ||  |||||| |||||||||| |||||||||||||||    
T  40781447 atttttgtgttaatatttatatttctttgtatattttaattgtcccataaattatctcaaaaaatagttgtt 40781518  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 203
Target Start/End: Original strand, 41062182 - 41062252
Alignment:
Q  133 caatacctatatttctttgtatatattttttgtccaataaattatccaaaaaatagttgttgaaataacat 203  Q
    ||||||||| |||||| ||||||| ||  || ||||| || |||||||||||||| ||||| |||||||||    
T  41062182 caatacctacatttctctgtatattttggttatccaagaagttatccaaaaaataattgttcaaataacat 41062252  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 203
Target Start/End: Complemental strand, 47642588 - 47642499
Alignment:
Q  115 ttgctttaatttttatgtcaatacctatatttctttgtatatattttttgtccaataaattat-ccaaaaaatagttgttgaaataacat 203  Q
    |||||||||||||| ||||| || ||| |||||||||||||  ||  |||||||| || || | ||||||||| |||||| |||||||||    
T  47642588 ttgctttaatttttgtgtcactatctaaatttctttgtataatttggttgtccaacaagttgtcccaaaaaatggttgttcaaataacat 47642499  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 10375752 - 10375831
Alignment:
Q  123 atttttatgtcaatacctatatttctttgtatatattt-tttgtccaataaattatccaaaaaatagttgttgaaataaca 202  Q
    |||||| ||||||||||||||||||||||||||| |||  |||||  ||||||||| || |||||| ||||| ||||||||    
T  10375752 atttttgtgtcaatacctatatttctttgtatatctttgattgtcttataaattat-cacaaaataattgtttaaataaca 10375831  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 203
Target Start/End: Complemental strand, 12588357 - 12588266
Alignment:
Q  115 ttgctttaatttttatgtcaatacctatatttctttgtatatattttttgtccaataaattatcc---aaaaaatagttgttgaaataacat 203  Q
    ||||||| |||||| || || ||| |||||||||||||| || ||  |||||||| |||||||||   |||||| ||||||| |||||||||    
T  12588357 ttgctttgatttttgtgccactacatatatttctttgtaaattttaattgtccaaaaaattatcccaaaaaaaaaagttgttcaaataacat 12588266  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 10053118 - 10053050
Alignment:
Q  137 acctatatttctttgtatatattttttgtccaataaattatccaa-aaaatagttgttgaaataacata 204  Q
    ||||| |||||||||||||| ||  |||||| | || |||||||| |||||||||||| ||||||||||    
T  10053118 acctacatttctttgtatattttagttgtcccacaagttatccaataaaatagttgttcaaataacata 10053050  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 156
Target Start/End: Complemental strand, 8502927 - 8502831
Alignment:
Q  62 ttttgaaataattctctcttttatactcttattgtgttattact--ctctccccgttgctttaatttttatgtcaatacctatatttctttgtatat 156  Q
    ||||||||||||| | ||| |  ||||| ||||||||| |||||  ||||| |  ||||||| |||||||| ||||||| || ||||||||||||||    
T  8502927 ttttgaaataattttatctctcttactcatattgtgttcttactttctctctctattgctttgatttttatctcaatacataaatttctttgtatat 8502831  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 34456880 - 34456920
Alignment:
Q  115 ttgctttaatttttatgtcaatacctatatttctttgtata 155  Q
    |||||||||||||| || ||||||||| |||||||||||||    
T  34456880 ttgctttaatttttgtgccaatacctaaatttctttgtata 34456920  T

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Target: scaffold0034 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 101881 - 101841
Alignment:
Q  115 ttgctttaatttttatgtcaatacctatatttctttgtata 155  Q
    ||||||| |||||||||||| |||||| |||||||||||||    
T  101881 ttgctttgatttttatgtcactacctaaatttctttgtata 101841  T

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