View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8436_low_11 (Length: 257)
Name: NF8436_low_11
Description: NF8436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8436_low_11 |
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| [»] chr2 (3 HSPs) |
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| [»] chr1 (7 HSPs) |
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| [»] scaffold0648 (1 HSPs) |
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| [»] scaffold0274 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 20 - 257
Target Start/End: Original strand, 33369968 - 33370205
Alignment:
| Q |
20 |
ttgtattctctatagatacttgttttgacgttggaatcaagaacttatagacactagtgtgaaacctgcttctgcaaattgctcaacctgaccatttctt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33369968 |
ttgtattctctatagatacttgttttgacgttggaatcaagaacttatagacactagtgtgaaacctgcttctgcaaattgctcaacctgaccatttctt |
33370067 |
T |
|
| Q |
120 |
tcacttttatctttaatgcacatcagatacaatatttgtgagagtctacgaatcaaggatggatctcatgagggctgtgattattggagcagaagggact |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33370068 |
tcacttttatctttaatgcacatcagatacaatatttgtgagagtctacgaatcaaggatggatctcatgagggctgtgattattggagcagaagggact |
33370167 |
T |
|
| Q |
220 |
ccttaccatgatggtcttttcttttttgatgtttactt |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
33370168 |
ccttaccatgatggtcttttcttttttgatgtttactt |
33370205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 102 - 257
Target Start/End: Original strand, 33363708 - 33363863
Alignment:
| Q |
102 |
tcaacctgaccatttctttcacttttatctttaatgcacatcagatacaatatttgtgagagtctacgaatcaaggatggatctcatgagggctgtgatt |
201 |
Q |
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|||| |||||||||||||| |||||| |||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||| |
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| T |
33363708 |
tcaatctgaccatttctttgacttttttctttaatgcttgtcagatacaatatttgtgagaatcttcgaatcaaggatggatctcatgagagctgtgatt |
33363807 |
T |
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| Q |
202 |
attggagcagaagggactccttaccatgatggtcttttcttttttgatgtttactt |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33363808 |
attggagcagaagggactccttaccatgatggtcttttcttttttgatgtttactt |
33363863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 140 - 257
Target Start/End: Complemental strand, 5839391 - 5839274
Alignment:
| Q |
140 |
catcagatacaatatttgtgagagtctacgaatcaaggatggatctcatgagggctgtgattattggagcagaagggactccttaccatgatggtctttt |
239 |
Q |
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|||||||| |||||||||| |||| || |||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| |
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| T |
5839391 |
catcagattcaatatttgttcgagtttatgaatcaagaatggatctcatgagggctgtaattattggagcagacgggactccttaccatgacggtctttt |
5839292 |
T |
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| Q |
240 |
cttttttgatgtttactt |
257 |
Q |
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|||||| ||| ||||||| |
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| T |
5839291 |
ctttttcgatctttactt |
5839274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 77 - 257
Target Start/End: Original strand, 41431738 - 41431919
Alignment:
| Q |
77 |
tgtgaaacctgcttctg-caaattgctcaacctgaccatttctttcacttttatctttaatgcacatcagatacaatatttgtgagagtctacgaatcaa |
175 |
Q |
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||||||||||| ||||| || |||| ||||||||||||| ||||| |||||| |||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
41431738 |
tgtgaaacctgtttctggcatattgatcaacctgaccatatctttgacttttttctttaatgctcatcagatacaatatttgtgagagtcttcgaatcaa |
41431837 |
T |
|
| Q |
176 |
ggatggatctcatgagggctgtgattattggagcagaagggactccttaccatgatggtcttttcttttttgatgtttactt |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41431838 |
ggatggatctcatgagggctgtgattattggagcagaagggactccttaccatgatggtcttttcttttttgatgtttactt |
41431919 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 77 - 257
Target Start/End: Original strand, 41426345 - 41426526
Alignment:
| Q |
77 |
tgtgaaacctgcttctg-caaattgctcaacctgaccatttctttcacttttatctttaatgcacatcagatacaatatttgtgagagtctacgaatcaa |
175 |
Q |
| |
|
||||||||| ||||||| || |||||||||| |||||||||||||||||||| || ||||| | ||||||||||||||||||||||||||| ||||||| |
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| T |
41426345 |
tgtgaaaccagcttctggcatattgctcaacatgaccatttctttcacttttttcattaattctcatcagatacaatatttgtgagagtctgtgaatcaa |
41426444 |
T |
|
| Q |
176 |
ggatggatctcatgagggctgtgattattggagcagaagggactccttaccatgatggtcttttcttttttgatgtttactt |
257 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41426445 |
ggatggatctcatgagggctgtgattattggagcaaaagggactccttaccatgacagtcttttcttttttgatgtttactt |
41426526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 97 - 251
Target Start/End: Original strand, 41442368 - 41442520
Alignment:
| Q |
97 |
attgctcaacctgaccatttctttcacttttatctttaatgcacatcagatacaatatttgtgagagtctacgaatcaaggatggatctcatgagggctg |
196 |
Q |
| |
|
|||||| ||||||||||||||| || |||| |||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||| |||| |||| |
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| T |
41442368 |
attgcttaacctgaccatttctgtc--ttttttctttaatgctcatcaaatacaatatttgtgagagtctgcgaatcaaggatggatctcttgagagctg |
41442465 |
T |
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| Q |
197 |
tgattattggagcagaagggactccttaccatgatggtcttttcttttttgatgt |
251 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
41442466 |
tgattattggagcagaagggactccttaccatgacggtcttttcttttttgatgt |
41442520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 131 - 245
Target Start/End: Original strand, 41453658 - 41453772
Alignment:
| Q |
131 |
tttaatgcacatcagatacaatatttgtgagagtctacgaatcaaggatggatctcatgagggctgtgattattggagcagaagggactccttaccatga |
230 |
Q |
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|
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41453658 |
tttaatgctcatcagatacaatatttgtgagagtctatgaatcaaggatggatctcttgagggctgtgattattggagcagaagagactccttaccatga |
41453757 |
T |
|
| Q |
231 |
tggtcttttcttttt |
245 |
Q |
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|
|||||||| ||||| |
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| T |
41453758 |
cggtcttttattttt |
41453772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 41448905 - 41448957
Alignment:
| Q |
205 |
ggagcagaagggactccttaccatgatggtcttttcttttttgatgtttactt |
257 |
Q |
| |
|
|||||||||| ||||||||||||| | |||||||||||||||||||||||||| |
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| T |
41448905 |
ggagcagaagagactccttaccataacggtcttttcttttttgatgtttactt |
41448957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 52472991 - 52473046
Alignment:
| Q |
169 |
gaatcaaggatggatctcatgagggctgtgattattggagcagaagggactcctta |
224 |
Q |
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|||||||||||||||||| |||||||||| |||||||||||||| || |||||||| |
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| T |
52472991 |
gaatcaaggatggatctcttgagggctgtaattattggagcagatggaactcctta |
52473046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 41448740 - 41448817
Alignment:
| Q |
33 |
agatacttgttttgacgttggaatcaagaacttatagacac----tagtgtgaaacctgcttctgcaaattgctcaacc |
107 |
Q |
| |
|
||||| ||||||||| |||||| | ||||||||||| |||| |||||||||| ||||||||||| ||||||||||| |
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|
| T |
41448740 |
agatatttgttttgatgttggagttaagaacttatacacactatgtagtgtgaaa-ctgcttctgcatattgctcaacc |
41448817 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 77 - 257
Target Start/End: Original strand, 5833 - 6014
Alignment:
| Q |
77 |
tgtgaaacctgcttctg-caaattgctcaacctgaccatttctttcacttttatctttaatgcacatcagatacaatatttgtgagagtctacgaatcaa |
175 |
Q |
| |
|
||||||||| ||||||| || |||||||||| ||||||||||| |||||||| || ||||||| ||||||||||||||||||||||||||| ||||||| |
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|
| T |
5833 |
tgtgaaaccagcttctggcatattgctcaacatgaccatttctatcacttttttcattaatgctcatcagatacaatatttgtgagagtctgtgaatcaa |
5932 |
T |
|
| Q |
176 |
ggatggatctcatgagggctgtgattattggagcagaagggactccttaccatgatggtcttttcttttttgatgtttactt |
257 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
5933 |
gaatggatctcatgagggctgtgattattggagcagaagggactccttaccatgacggtcttttcttttttgatgtttactt |
6014 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 77 - 257
Target Start/End: Complemental strand, 17625 - 17444
Alignment:
| Q |
77 |
tgtgaaacctgcttctg-caaattgctcaacctgaccatttctttcacttttatctttaatgcacatcagatacaatatttgtgagagtctacgaatcaa |
175 |
Q |
| |
|
||||||||| ||||||| || |||||||||| ||||||||||| |||||||| || ||||||| ||||||||||||||||||||||||||| ||||||| |
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|
| T |
17625 |
tgtgaaaccagcttctggcatattgctcaacatgaccatttctatcacttttttcattaatgctcatcagatacaatatttgtgagagtctgtgaatcaa |
17526 |
T |
|
| Q |
176 |
ggatggatctcatgagggctgtgattattggagcagaagggactccttaccatgatggtcttttcttttttgatgtttactt |
257 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
17525 |
gaatggatctcatgagggctgtgattattggagcagaagggactccttaccatgacggtcttttcttttttgatgtttactt |
17444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 101 - 249
Target Start/End: Complemental strand, 7763139 - 7762991
Alignment:
| Q |
101 |
ctcaacctgaccatttctttcacttttatctttaatgcacatcagatacaatatttgtgagagtctacgaatcaaggatggatctcatgagggctgtgat |
200 |
Q |
| |
|
|||||||||||||||| ||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7763139 |
ctcaacctgaccatttatttgacttttttctttaatgctcatcagatacaatatttgtgagagtctacgaatcaaggatggatctcatgagagctgtgat |
7763040 |
T |
|
| Q |
201 |
tattggagcagaagggactccttaccatgatggtcttttcttttttgat |
249 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7763039 |
tattggagcacaagggactccttaccatgatggtcttttcttttttgat |
7762991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 144 - 249
Target Start/End: Complemental strand, 21223965 - 21223860
Alignment:
| Q |
144 |
agatacaatatttgtgagagtctacgaatcaaggatggatctcatgagggctgtgattattggagcagaagggactccttaccatgatggtcttttcttt |
243 |
Q |
| |
|
|||| |||||||||| ||||| || |||||||| || ||||| ||||||||||||||||||||||||| || || ||||| |||||||| || |||||| |
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|
| T |
21223965 |
agattcaatatttgtcagagtttatgaatcaagaatagatctgttgagggctgtgattattggagcagagggaaccccttatcatgatggcctattcttt |
21223866 |
T |
|
| Q |
244 |
tttgat |
249 |
Q |
| |
|
|||||| |
|
|
| T |
21223865 |
tttgat |
21223860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 170 - 257
Target Start/End: Original strand, 1004661 - 1004748
Alignment:
| Q |
170 |
aatcaaggatggatctcatgagggctgtgattattggagcagaagggactccttaccatgatggtcttttcttttttgatgtttactt |
257 |
Q |
| |
|
|||||| |||| |||| |||||||||| ||||||||| || |||||||||||||||| | |||||||||||||||||| ||||||| |
|
|
| T |
1004661 |
aatcaaagatgaatctgttgagggctgtaattattggaccaaaagggactccttaccagcacggtcttttcttttttgatttttactt |
1004748 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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