View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8436_low_2 (Length: 557)
Name: NF8436_low_2
Description: NF8436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8436_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 6 - 454
Target Start/End: Complemental strand, 35355932 - 35355481
Alignment:
| Q |
6 |
tttggtgttgctccattaggacctgatcagagctaaagctatgatattcgatattcacaatcacatggggttatactattacgagaaattcaattccttg |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35355932 |
tttggtgttgctccattaggacctgatcagagctaaagctatgatattcggtattcacaatcacatggggttatactattacgagaaattcaattctctg |
35355833 |
T |
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| Q |
106 |
ttcctacagcagtgtcttgtcacttcagcaaaatatagtaaattgctcattactccacaatgaaaatttaaagactcttgttgcgtgttatgagtgaata |
205 |
Q |
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| T |
35355832 |
ttcctacagcagtgtcttgtcacttcagcaaaatatagtaaattgctcattactccacaatgaaaatttagagactcttgttgcgtgttatgagtgaata |
35355733 |
T |
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| Q |
206 |
tctgttattcatgtcaacatgcttaaaactggaaactgaaatcaacttgtcataaaaactatcacccttacctaaacacatatttgtgaaacttacaact |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35355732 |
tctgttattcatgtcaacatgcttaaaactggaaactgaaatcaacttgtcataaaaactatcacccttacctaaacacatatttgtgaaacttacaact |
35355633 |
T |
|
| Q |
306 |
tttcctttcaccactaaaatcacaatctttattattgagataatagtaattttgatatttgaatgcattgaaatcctaaaatagtctttattgttaacaa |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35355632 |
tttcctttcaccactaaaatcacaatctttattattgagataatagtaattttgatctttgaatgcattgaaatcctaaaatagtctttattgttaacaa |
35355533 |
T |
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| Q |
406 |
gttttgttaatatttt---tatgagtcctttaatatacttacataatgtcat |
454 |
Q |
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| T |
35355532 |
gttttgttaatattttttatatgaggcctttaatatacttacataatgtcat |
35355481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 443 - 542
Target Start/End: Complemental strand, 35355465 - 35355366
Alignment:
| Q |
443 |
acataatgtcatattaatccatataaatatttatctattgtcatattcatctttnnnnnnnnnnngagttattcttaacattgaagactattttaatatt |
542 |
Q |
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||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
35355465 |
acataatgtcatattaatctatataaatatttatctatagtcatattcatctttaaagaaaaaaagagttattcttaacatcgaagactattttaatatt |
35355366 |
T |
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