View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8436_low_3 (Length: 505)
Name: NF8436_low_3
Description: NF8436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8436_low_3 |
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| [»] scaffold1063 (1 HSPs) |
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Alignment Details
Target: scaffold1063 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold1063
Description:
Target: scaffold1063; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 133 - 377
Target Start/End: Complemental strand, 3102 - 2855
Alignment:
| Q |
133 |
atggcatctttccataagcatcacagtatcctattgcttcatccaaacctacaacatatcgtagcaacattttggttcataggctttctttaaagtgtaa |
232 |
Q |
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| T |
3102 |
atggcatctttccataagcatcacagtatcctattgcttcatccaaacctacaacatatggtagcagcattttggttcataggctttctttaaagtataa |
3003 |
T |
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| Q |
233 |
ccagaaggatttttcaagtaattatctcatcagcggatgtatccatgaattgataaaagcatgcacat-aagcttttgcatgtattttataca--acaaa |
329 |
Q |
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| T |
3002 |
ctcgaaggatttttcaagtaattatctcatcagcggatgtatccatgaattgataaaagcatgcccataaagcttttgcatgtattttacacaacacaaa |
2903 |
T |
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| Q |
330 |
aaatagagcatttataaatggaaaaatttatataataaagatttagtc |
377 |
Q |
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| T |
2902 |
aaatagagcatttataaatggaaaaatttatataataaagatgtagtc |
2855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 144; Significance: 2e-75; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 6939679 - 6939870
Alignment:
| Q |
10 |
tttcctccgattcttatcactttgagaacttaggcaagtgttcaatttgttcttttttcatcagtctttaattcagcgagagatttgaaattgaaaccat |
109 |
Q |
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| T |
6939679 |
tttcctccaattcttatcactttgagaactaaggcaggtgttcaatttgttcttttttcatcagtcttcaattcagcgagagatttgaaattgaaaccat |
6939778 |
T |
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| Q |
110 |
attgtcgacgacttgaagcaaacatggcatctttccataagcatcacagtatcctattgcttcatccaaacctacaacatatcgtagcaaca |
201 |
Q |
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| T |
6939779 |
attgtcgacaacttgaagcaaaaatggcatctttccataagcatcacggtatccgtatgcttcatccaaacctacaatatatggtagcaaca |
6939870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 9 - 201
Target Start/End: Original strand, 6942853 - 6943045
Alignment:
| Q |
9 |
ctttcctccgattcttatcactttgagaacttaggcaagtgttcaatttgttcttttttcatcagtctttaattcagcgagagatttgaaattgaaacca |
108 |
Q |
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| T |
6942853 |
ctttcctccaattcttatcactttgagaactaaggcaggtgtaaaatttgttcttttttcatcagtcttcaattcagcgagagatttgaaattgaaacca |
6942952 |
T |
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| Q |
109 |
tattgtcgacgacttgaagcaaacatggcatctttccataagcatcacagtatcctattgcttcatccaaacctacaacatatcgtagcaaca |
201 |
Q |
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| T |
6942953 |
tattgtcgacaacttgaagcaaaaatggcatctttccataagcatcacagtatccgtatgcttcatccaaagctacaatatatggtagcaaca |
6943045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 212 - 355
Target Start/End: Original strand, 6943078 - 6943221
Alignment:
| Q |
212 |
taggctttctttaaagtgtaaccagaaggatttttcaagtaattatctcatcagcggatgtatccatgaattgataaaagcatgcacataagcttttgca |
311 |
Q |
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| T |
6943078 |
taggctttctttaaagtgtaacctgaaggatttttcaagtaattatctcatcagcggatgtatccatgaattgataaaaacatgcacataagcttttgta |
6943177 |
T |
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| Q |
312 |
tgtattttatacaacaaaaaatagagcatttataaatggaaaaa |
355 |
Q |
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| T |
6943178 |
tgtattttacacaataaaaaatagagaatttataaatggaaaaa |
6943221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 212 - 352
Target Start/End: Original strand, 6939903 - 6940046
Alignment:
| Q |
212 |
taggctttctttaaagtgtaaccagaaggatttttcaagtaattatctcatcagcggatgtatccatgaattgataaaagcatgcacataagc---tttt |
308 |
Q |
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| T |
6939903 |
taggctttctttgaagtgtaacctgaaggatttttcaagtaattatctcatcagcggatgtatccatgaattgataaagacatgcacatatgcttttttt |
6940002 |
T |
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| Q |
309 |
gcatgtattttatacaacaaaaaatagagcatttataaatggaa |
352 |
Q |
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| T |
6940003 |
gtatgtattttacacaagaaaaaatagagcatttacaaatggaa |
6940046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 8 - 160
Target Start/End: Complemental strand, 6787850 - 6787696
Alignment:
| Q |
8 |
actttcctccgattcttatcactttgagaacttaggcaagtgttcaatttgttcttttttcatcagtctttaattcagcgagagatttgaaattgaaacc |
107 |
Q |
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| T |
6787850 |
actttccttcaattcttatcagtttgggaacataggcaagtgttcaatttgttctcgcttaatcagtcttcaattcagcgagagatttgcaattgaaacc |
6787751 |
T |
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| Q |
108 |
atattgtcgacgacttgaagc--aaacatggcatctttccataagcatcacagta |
160 |
Q |
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| T |
6787750 |
atattgtcgacaacttcaaacagaaaaatggcatccttccataagcatcacagta |
6787696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 358 - 489
Target Start/End: Complemental strand, 6787594 - 6787462
Alignment:
| Q |
358 |
tatataataaagatttagtccaatcaaaatatacattcaatgcattaagttccaaccatacaaagatccatatgaat-ttttaaaactgtgcagcaatta |
456 |
Q |
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| T |
6787594 |
tatataataaaggtatagtccaatcaaaatatacattaaatgcattgagtttcacccatacaaagatccatatgaattttttaaaactgtgcagccatta |
6787495 |
T |
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| Q |
457 |
gccaagtctccaagggataaatgattgaaactt |
489 |
Q |
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| T |
6787494 |
gctaagtctcccaagagtaaatgcttgaaactt |
6787462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 236 - 334
Target Start/End: Complemental strand, 6787691 - 6787593
Alignment:
| Q |
236 |
gaaggatttttcaagtaattatctcatcagcggatgtatccatgaattgataaaagcatgcacataagcttttgcatgtattttatacaacaaaaaata |
334 |
Q |
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| T |
6787691 |
gaaggatttttcaagtaattatctcatcagcggatgtattcatgaattgataaaaacatgtccataagattttgcatgtattttacacaataaaaaata |
6787593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 397 - 489
Target Start/End: Original strand, 6943234 - 6943327
Alignment:
| Q |
397 |
atgcattaagttccaaccatacaaagatccatatgaatttttaaaa-ctgtgcagcaattagccaagtctccaagggataaatgattgaaactt |
489 |
Q |
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| T |
6943234 |
atgcattaagtttcaaccatacaaagatccatatcaatttttaaaaactgtgcagcaattagctaagtctccaagagattaatgattgaaactt |
6943327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 397 - 476
Target Start/End: Original strand, 6940064 - 6940143
Alignment:
| Q |
397 |
atgcattaagttccaaccatacaaagatccatatgaatttttaaaactgtgcagcaattagccaagtctccaagggataa |
476 |
Q |
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| T |
6940064 |
atgcattaactttcaaccatacaaagatccatatgaatttttaaaactgtgcagcaattagctaagtctccaagagataa |
6940143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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