View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8436_low_4 (Length: 476)
Name: NF8436_low_4
Description: NF8436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8436_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 13 - 276
Target Start/End: Original strand, 23558172 - 23558435
Alignment:
| Q |
13 |
agatgaagaccggtcttaaaccttaagcctgactgttgattgtggattagacattactgcttggtgttagggttttagcaatgcataatactgtaattct |
112 |
Q |
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| T |
23558172 |
agatgaagaccggtcttaaaccttaagcctgactgttgattgtggattagacattactgcttggtgttagggttttagcaatgcataatactgtaattct |
23558271 |
T |
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| Q |
113 |
catgtacaatttattttgtgtagaagtggctgtatcttattcttgattcttaacatccttccaatctgaagagaacaacaaacttgtattttggcataat |
212 |
Q |
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| T |
23558272 |
catgtacaatttattttgtgtagaagtggctgtatcttattcttgattcttaacatccttccaatctgaagagaacaacaaacttgtattttggcataat |
23558371 |
T |
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| Q |
213 |
ttagtgcagccttttggttgggttggctgccagcatgtagtttattgtgtacacatcaacatca |
276 |
Q |
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| T |
23558372 |
tttgtgcagccttttggttgggttggctgccagcatgtagtttattgtgtacacatcaacatca |
23558435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 310 - 453
Target Start/End: Original strand, 23558468 - 23558611
Alignment:
| Q |
310 |
agtttcaaggatctgtctatttaataattatttaacctttgaagttgacacctttctgggcttattgataatttcttattgttaggtgatgaagtctcta |
409 |
Q |
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| T |
23558468 |
agtttcaaggatctgtctatttaataattatttaacctttgaagttgacacctttctgggcttattgataatttcttattgttaggtgatgaagtctcta |
23558567 |
T |
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| Q |
410 |
tctttctattcaatattttggtttatgtcattgccagggctcca |
453 |
Q |
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| T |
23558568 |
tctttctattcaatattttggtttatgtcattgccagggctcca |
23558611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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