View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8436_low_8 (Length: 360)
Name: NF8436_low_8
Description: NF8436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8436_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 19 - 344
Target Start/End: Complemental strand, 28161464 - 28161139
Alignment:
| Q |
19 |
aattttgtcaaagcaatgtcaaaatgcagacatttttcaaattactttcttagcaaaagatattgttgattgtgttgttaataattgcatctataattaa |
118 |
Q |
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| T |
28161464 |
aattttgtcaaagcaatgtcaaaatgcagacatttttcaaattactttctcagcaaaagatattgttgattgagttgttaataattgcatctataattaa |
28161365 |
T |
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| Q |
119 |
acacaataaattattaattgtaatcaaggtaggtttttctacagatttctcaatactagtactagcacatgatatataaataatttaaatcatgtcatga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
28161364 |
acacaataaattattaattgtaatcaaggtaggtttttctacagatttctcaatactagtactagcacatgatatataaataatttaaatcgtgtcatga |
28161265 |
T |
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| Q |
219 |
aactatacaccacttatacaaaggacaaaatatgataaacctgcataaagactaaaatgctcactggcattaaattaaataaattaaacaaacaaagcaa |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28161264 |
aactatacaccacttatacaaaggacaaaatatgataaacctgcataaagactaaaatggtcactggcattaaattaaataaattaaacaaacaaagcaa |
28161165 |
T |
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| Q |
319 |
aacacagtacgtgtattaaagaaaaa |
344 |
Q |
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|||||||||||||| ||||||||||| |
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| T |
28161164 |
aacacagtacgtgtgttaaagaaaaa |
28161139 |
T |
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