View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8437_high_1 (Length: 361)
Name: NF8437_high_1
Description: NF8437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8437_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 43940756 - 43941102
Alignment:
| Q |
1 |
ctcatttaaagtaatagagaaccgataaaatatggaaggacat---atttcatttcttaggttggtcaaattccaatagccgttaaacgtgatagtgggt |
97 |
Q |
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| T |
43940756 |
ctcatttaaagtaatagagaaccgataaaatatgggaggacatgatatttcatttctttggttggtcaaattccaatagccgttaaacgtgatagtgggt |
43940855 |
T |
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| Q |
98 |
ttgatatttctattcacttttctaaaaataggtcaacttggtcatggcacatttttaatggggctggatggtagattactagattagcacatgttggtcc |
197 |
Q |
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| T |
43940856 |
ttgatatttctattcacttttctaaaaataggtcaacttggtcatggcacatttttaatggggctggatggtagattactagattagcacatgttggtcc |
43940955 |
T |
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| Q |
198 |
agtttgctaccacaaattcttattctttattttacaccattgaaataaagaacactccagaaccaaaaggtcatttctctttcatgaattagttctccaa |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
43940956 |
agtttgctaccacaaattcttattctttattttacaccattgaaataaagaacactccaaaaccaaaaagtcatttctctttcatgaattagttctccaa |
43941055 |
T |
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| Q |
298 |
tccaagcaaattgcattcaccgtaaaaagtttattgtcctgcaactt |
344 |
Q |
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| T |
43941056 |
tccaagcaaattgcattcaccgtaaaaagtttattgtcctgcaactt |
43941102 |
T |
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