View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8437_high_2 (Length: 230)
Name: NF8437_high_2
Description: NF8437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8437_high_2 |
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| [»] scaffold0433 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 3770814 - 3770617
Alignment:
| Q |
19 |
gatttgctaatggctatgaattttgtttttactgaaggaaagtataatggaagtaaacttactattttgggaaggaatgttgtttttcataaagtttgag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3770814 |
gatttgctaatggctatgaattttgtttttactgaaggaaagtataatggaagtaaacttactattttgggaaggaatgttgtttttcataaagtttgag |
3770715 |
T |
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| Q |
119 |
agatgcctgtgattggtggtattggacttttcagatttgctgaagctaatactcattggtttgatgtcaaatctggggatgctgttgtcgagaataat |
216 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
3770714 |
agatgcctatgattggtggtattggacttttcagatttgctgaagctaatactcattggtttgatatcaaatctggggatgctgttgtcgagtataat |
3770617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 3755523 - 3755314
Alignment:
| Q |
19 |
gatttgctaatggctatgaattttgtttttactgaaggaaagtataatggaagtaaacttactattttgggaaggaatgttgtttttcataaagtttgag |
118 |
Q |
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|||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||| ||| |
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| T |
3755523 |
gatttgcttatggctatgaattttgcttttactgaaggaaagtataatggaagtacacttactatattgggaaggaatgctgtttttcataaagttagag |
3755424 |
T |
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| Q |
119 |
agatgcctgtgattggtggtattggacttttcagatt------------tgctgaagctaatactcattggtttgatgtcaaatctggggatgctgttgt |
206 |
Q |
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||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
3755423 |
agatgcctgtgattggtggtagtggatttttcagatttgctagaggttatgctgaagctaatactcattggtttgatatcaaatctggggatgctattgt |
3755324 |
T |
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| Q |
207 |
cgagaataat |
216 |
Q |
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||| ||||| |
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| T |
3755323 |
tgagtataat |
3755314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 3767051 - 3766911
Alignment:
| Q |
19 |
gatttgctaatggctatgaattttgtttttactgaaggaaagtataatggaagtaaacttactattttgggaaggaatgttgtttttcataaagtttgag |
118 |
Q |
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|||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||| ||| |
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| T |
3767051 |
gatttgcttatggctatgaattttgcttttactgaaggaaagtataatggaagtacacttactatattgggaaggaatgctgtttttcataaagttagag |
3766952 |
T |
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| Q |
119 |
agatgcctgtgattggtggtattggacttttcagatttgct |
159 |
Q |
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| T |
3766951 |
agatgcctgtgattggtggtagtggagttttcagatttgct |
3766911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 3751647 - 3751516
Alignment:
| Q |
28 |
atggctatgaattttgtttttactgaaggaaagtataatggaagtaaacttactattttgggaaggaatgttgtttttcataaagtttgagagatgcctg |
127 |
Q |
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||||||||||| |||| ||| | |||||||||||||||||| |||| | ||||||| ||||| |||||| || | || |||| | | ||||||||||| |
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| T |
3751647 |
atggctatgaactttgctttcattgaaggaaagtataatggtagtacaattactatcttggggaggaattctggtattaataaggctagagagatgccta |
3751548 |
T |
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| Q |
128 |
tgattggtggtattggacttttcagatttgct |
159 |
Q |
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| T |
3751547 |
ttattggtggtagtggacttttcagatttgct |
3751516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 159
Target Start/End: Complemental strand, 3762619 - 3762495
Alignment:
| Q |
35 |
tgaattttgtttttactgaaggaaagtataatggaagtaaacttactattttgggaaggaatgttgtttttcataaagtttgagagatgcctgtgattgg |
134 |
Q |
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||||||||| ||| | |||||||||||||||||| |||| ||||||| ||||| |||||| | | || |||| ||| | ||||||||||| |||| |
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| T |
3762619 |
tgaattttgctttcattgaaggaaagtataatggtagtactattactatcttggggaggaatccagctcttaataaggttagggagatgcctgttgttgg |
3762520 |
T |
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| Q |
135 |
tggtattggacttttcagatttgct |
159 |
Q |
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||| | ||||||||||||||||||| |
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| T |
3762519 |
tggcagtggacttttcagatttgct |
3762495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 201
Target Start/End: Complemental strand, 3776701 - 3776522
Alignment:
| Q |
34 |
atgaattttgtttttactgaaggaaagtataatggaagtaaacttactattttgggaaggaatgttgtttttcataaagtttgagagatgcctgtgattg |
133 |
Q |
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|||||||||| ||| | |||||||||||||||||| |||| ||||||| ||||| |||||| || | | |||| ||| | || |||||||| ||| |
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| T |
3776701 |
atgaattttgctttcattgaaggaaagtataatggtagtaccattactatcttggggaggaatcatgctcgtaataaggttagggaaatgcctgttgttg |
3776602 |
T |
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| Q |
134 |
gtggtattggacttttcagatttgct------------gaagctaatactcattggtttgatgtcaaatctggggatgct |
201 |
Q |
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|||||| ||||||||||||||||||| ||||||| |||||||||| |||||| |||| ||||||||||| |
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| T |
3776601 |
gtggtagtggacttttcagatttgctagaggttatgctgaagctactactcattggattgatgccaaagctggggatgct |
3776522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 3780880 - 3780835
Alignment:
| Q |
156 |
tgctgaagctaatactcattggtttgatgtcaaatctggggatgct |
201 |
Q |
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|||| ||||||||||||||||| ||||| ||||| ||||||||||| |
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| T |
3780880 |
tgctcaagctaatactcattggattgatttcaaaactggggatgct |
3780835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 3780930 - 3780889
Alignment:
| Q |
118 |
gagatgcctgtgattggtggtattggacttttcagatttgct |
159 |
Q |
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||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
3780930 |
gagatgcctgttgttggtggtagtggacttttcagatttgct |
3780889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 159
Target Start/End: Complemental strand, 3845098 - 3844990
Alignment:
| Q |
51 |
tgaaggaaagtataatggaagtaaacttactattttgggaaggaatgttgtttttcataaagtttgagagatgcctgtgattggtggtattggacttttc |
150 |
Q |
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|||||| || ||||||||||| | | ||||||| |||||||| |||| || | | | || ||| |||| ||||||||||||||||| | ||| ||||| |
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| T |
3845098 |
tgaagggaaatataatggaagcacaattactatcttgggaagaaatgatgcatatgaaaaggttagagaaatgcctgtgattggtggaagtgggcttttt |
3844999 |
T |
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| Q |
151 |
agatttgct |
159 |
Q |
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||||||||| |
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| T |
3844998 |
agatttgct |
3844990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0433 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0433
Description:
Target: scaffold0433; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 159
Target Start/End: Original strand, 10050 - 10158
Alignment:
| Q |
51 |
tgaaggaaagtataatggaagtaaacttactattttgggaaggaatgttgtttttcataaagtttgagagatgcctgtgattggtggtattggacttttc |
150 |
Q |
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|||||| || ||||||||||| | | ||||||| |||||||| |||| || | | | || ||| |||| ||||||||||||||||| | ||| ||||| |
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| T |
10050 |
tgaagggaaatataatggaagcacaattactatcttgggaagaaatgatgcatatgaaaaggttagagaaatgcctgtgattggtggaagtgggcttttt |
10149 |
T |
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| Q |
151 |
agatttgct |
159 |
Q |
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||||||||| |
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| T |
10150 |
agatttgct |
10158 |
T |
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