View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8437_low_1 (Length: 465)
Name: NF8437_low_1
Description: NF8437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8437_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 20 - 429
Target Start/End: Complemental strand, 10232577 - 10232169
Alignment:
| Q |
20 |
ctgagtatgatccagatcagtacctatgcgaaaaggaattcacccttttaggaagacaataccaaagaaaggatttggaggcaagtatggacatgttttg |
119 |
Q |
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| T |
10232577 |
ctgagtatgatccagatcagtacctatgcgaaaaggaattcacccttttaggaagacaataccaaagaaaggatttggaggcaagtatggacatgttttg |
10232478 |
T |
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| Q |
120 |
ttagatacaattaccattgtgcatttatcgaagttacttcatcattacaatttacaacggtttgtttattttctttccnnnnnnnaataaaaaccttgca |
219 |
Q |
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| T |
10232477 |
ttagatacaattaccattgtgcatttatcgaagttacttcatcattacaatttacaacagtttgtttattttctttcctttttttaat-aaaaccttgca |
10232379 |
T |
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| Q |
220 |
gctcaagaatgccagaggatatactttgaaatgtagtcattacatcccttcacatttcccggaagatatatcccttccttgtgttatctattgccatgga |
319 |
Q |
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| T |
10232378 |
gctcaagaatgccagaggatatactttgaaatgtagtcattacatcccttcacatttcccggaagatatatcccttccttgtgttatctattgccatgga |
10232279 |
T |
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| Q |
320 |
aataggtattttgttttttgtggacactactatagcagctctttagagtctgtatatgattctgaattataattataaatacatttggatgctatatttt |
419 |
Q |
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| T |
10232278 |
aataggtattttgttttttgtggacactactatagcagctctttagagtctgtatatgattctgaattataattataaatacatttggatgctatatttt |
10232179 |
T |
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| Q |
420 |
aaactctatt |
429 |
Q |
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| T |
10232178 |
aaactctatt |
10232169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 172
Target Start/End: Complemental strand, 10842574 - 10842428
Alignment:
| Q |
29 |
atccagatcagtacctatgcgaaaaggaattcacccttttaggaagacaataccaaagaaaggatttggaggcaagtatggacatgttttgttagatac- |
127 |
Q |
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| T |
10842574 |
atccagaccagtacctatggaaaaaggaaatcactcttgtaggaagtaaataccgcatgaggaatttagaggcaagtgtggacatgttttgtttgatact |
10842475 |
T |
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| Q |
128 |
--aattaccattgtgcatttatcgaagttacttcatcattacaattt |
172 |
Q |
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| T |
10842474 |
acaattactatttttcatttttggaagttacttcatgattacaattt |
10842428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 216 - 328
Target Start/End: Complemental strand, 56249171 - 56249059
Alignment:
| Q |
216 |
tgcagctcaagaatgccagaggatatactttgaaatgtagtcattacatcccttcacatttcccggaagatatatcccttccttgtgttatctattgcca |
315 |
Q |
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| T |
56249171 |
tgcagctcaagaatgccagaggctataccttgaagtgtagtcattatctcccttttccttttcctgaagatacatctcttccttgtgttatatattgcca |
56249072 |
T |
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| Q |
316 |
tggaaataggtat |
328 |
Q |
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|||||| |||||| |
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| T |
56249071 |
tggaaacaggtat |
56249059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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