View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8437_low_4 (Length: 263)
Name: NF8437_low_4
Description: NF8437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8437_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 42628556 - 42628785
Alignment:
| Q |
18 |
gacattttgcacacacatgtttcgtccaatacaggatcattggccactgtttcaggagagttcaatccatcagaaccattgtcctttccagataattgaa |
117 |
Q |
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| T |
42628556 |
gacattttgcacacacatgtttcgtccaatacaggatcattggccactgtttcaggagagttcaatccatcagaaccattgtcctttccagataattgaa |
42628655 |
T |
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| Q |
118 |
tcggtccacaaccatagaaccctttgttaggggcacatgtgtactctgcattgcttccatcacagtagtcttatgatgcaccatcaatctcttcagtata |
217 |
Q |
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| T |
42628656 |
tcggtccacaaccatagaaccctttgttaggggcacatgtgtactctgcattgctttcatcacagtagtcttatgatgcaccatcaatctcttcagtata |
42628755 |
T |
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| Q |
218 |
gcagaaatctgcatcaacattaatttcaca |
247 |
Q |
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| T |
42628756 |
gcagaaatctgcatcaacattaatttcaca |
42628785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 107 - 247
Target Start/End: Original strand, 42639290 - 42639429
Alignment:
| Q |
107 |
agataattgaatcggtccacaaccatagaaccctttgttaggggcacatgtgtactctgcattgcttccatcacagtagtcttatgatgcaccatcaatc |
206 |
Q |
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| T |
42639290 |
agatagttgaatcggtccacgaccatagtaacctttgttaggggcacatggccactctgtgttgccttcatcacagtagtcctttgatggaccatcaatc |
42639389 |
T |
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| Q |
207 |
tcttcagtatagcagaaatctgcatcaacattaatttcaca |
247 |
Q |
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| T |
42639390 |
tcttcagtatagcaaaaatctgca-caacattaatatcaca |
42639429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 107 - 247
Target Start/End: Original strand, 42634213 - 42634353
Alignment:
| Q |
107 |
agataattgaatcggtccacaaccatagaaccctttgttaggggcacatgtgtactctgcattgcttccatcacagtagtcttatgatgcaccatcaatc |
206 |
Q |
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| T |
42634213 |
agataattgaatcggtccacggccatagtatcctttgttaggggcacacgggtactctgtgttgctttcatcgcagtagtcctttgatgcaccatccttc |
42634312 |
T |
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| Q |
207 |
tcttcagtatagcagaaatctgcatcaacattaatttcaca |
247 |
Q |
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| T |
42634313 |
tcttctatatagcaaaaatctgcatcaatggtaatttcaca |
42634353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 42634132 - 42634190
Alignment:
| Q |
50 |
aggatcattggccactgtttcaggagagttcaatccatcagaaccattgtcctttccag |
108 |
Q |
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| T |
42634132 |
aggatcattggccactgtttcaggagagttcaattcatcaaaaccactgtcctttccag |
42634190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 100
Target Start/End: Original strand, 42639209 - 42639259
Alignment:
| Q |
50 |
aggatcattggccactgtttcaggagagttcaatccatcagaaccattgtc |
100 |
Q |
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| T |
42639209 |
aggatcattggccactgtttcaggtgagttcaatccatcaaaaccattgtc |
42639259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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