View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8438_high_11 (Length: 424)
Name: NF8438_high_11
Description: NF8438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8438_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 19 - 405
Target Start/End: Original strand, 33272155 - 33272541
Alignment:
| Q |
19 |
tgcaacacatgcaacccattatacacaacaaatcacttcttcccacaaaaccaatctccaaaatatcaatgttcactcctcagtaacatttccaatatcc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33272155 |
tgcaacacatgcaacccattatacacaacaaatcacttcttcccacaaaaccaatctccaaaatatcaatgttcactcctcggtaacatttccaatatcc |
33272254 |
T |
|
| Q |
119 |
tatcctactaaacttaaccaccaaactaagtaacaattcttcttaaatcttaatcttaaatctcacacaaatgaagnnnnnnnngtacacaatatcaact |
218 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33272255 |
tatcctactaaatttaaccaacaaactaagtaacaattcttcttaaatcttaatcttaaatctcacacaaatgaagaaaaaaaagtacacaatatcaact |
33272354 |
T |
|
| Q |
219 |
acagtagtaaccaagtattcatcatccaatctcaaatttggtgacaaatcagcaaacaaaaaacaaaacccatctctaaaaacccaattaccaactataa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
33272355 |
acagtagtaaccaagtattcatcatccaatctcaaatttggtgacaaatcagcaaacaaaaaacaaaacccatctctaaaaacccaattacccactatga |
33272454 |
T |
|
| Q |
319 |
taccctcaaattcaacaaatcaaaccacataaatctcaaaaatcataactttactcaacccacttgaacaaaaaactaccaatgaga |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33272455 |
taccctcaaattcaacaaatcaaaccacataaatctcaaaaatcataactttactcaacccacttgaacaaaaaactaccaatgaga |
33272541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 155; Significance: 4e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 147 - 373
Target Start/End: Complemental strand, 32556857 - 32556632
Alignment:
| Q |
147 |
agtaacaattcttcttaaatcttaatcttaaatctcacacaaatgaagnnnnnnnngtacacaatatcaactacagtagtaaccaagtattcatcatcca |
246 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||| | |||||||||||||||||| |
|
|
| T |
32556857 |
agtaagaattcttcttaaatcttaatcttaaatctcacacaaatgaa-aaaaaaaagtatacaatatcaactacaatagcatccaagtattcatcatcca |
32556759 |
T |
|
| Q |
247 |
atctcaaatttggtgacaaatcagcaaacaaaaaacaaaacccatctctaaaaacccaattaccaactataataccctcaaattcaacaaatcaaaccac |
346 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32556758 |
atcttaaatttggtgacaaatcagcaaacaaaagacaaaacacatctctaaaaacccaattaccaactataagaccctcaaattcaacaaatcaaaccac |
32556659 |
T |
|
| Q |
347 |
ataaatctcaaaaatcataactttact |
373 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
32556658 |
gtaaatctcaaaaatcataactttact |
32556632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University