View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8438_high_15 (Length: 375)
Name: NF8438_high_15
Description: NF8438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8438_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 200 - 362
Target Start/End: Original strand, 19768832 - 19768999
Alignment:
| Q |
200 |
aaaaaccttcactctgacctaaccccctctctctcccttttctctcacacccattctcttaacaccaccatcgacctatcccacccaaattgtgagaccc |
299 |
Q |
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| T |
19768832 |
aaaatccttcactctgacctaaccccctctctctcccttttctctcacacccattctcttaacgccaccatcgacctatcccacccaaattgtgagaccc |
19768931 |
T |
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| Q |
300 |
tttcttcaaatcctct-----ttatcaaagaagaggttttcttcttccagatcgcaaatccttctctg |
362 |
Q |
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| T |
19768932 |
tttcttcaaatcctctttatcttatcaaagaagaggtcttcttcttccaaatcgcaaatccttctctg |
19768999 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 168
Target Start/End: Complemental strand, 55819932 - 55819889
Alignment:
| Q |
125 |
atagcattttccaatcctgtattttctccaattcccatatggac |
168 |
Q |
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| T |
55819932 |
atagcattttccaatcctgtattttctccaattcccttatggac |
55819889 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 5578027 - 5577985
Alignment:
| Q |
109 |
tacacacgatgaaaatatagcattttccaatcctgtattttct |
151 |
Q |
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| T |
5578027 |
tacacactatgaaaatatagcattttccaatcctatattttct |
5577985 |
T |
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