View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8438_high_2 (Length: 637)
Name: NF8438_high_2
Description: NF8438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8438_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 596; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 20 - 623
Target Start/End: Original strand, 33552024 - 33552627
Alignment:
| Q |
20 |
tcgttatcccaatattcaacatcgacagcaaaagtatcttctcaagaagaagagttgactgattctctacgcgcctgttattctcaacccttgtccatga |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33552024 |
tcgttatcccaatattcaacatcgacagcaaaagtatcttctcaagaagaagagttgactgattctctacgcgcctgttattctcaacccttgtccatga |
33552123 |
T |
|
| Q |
120 |
tggaggtaaatcatgcttcatgaaaaattcttatacctgttttaatatgtcgtgtggctcctaattcatcagttctgttatgaagttctgtctatatgag |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33552124 |
tggaggtaaatcatgcttcatgaaaaattcttatacctgttttaatatgtcgtgtggctcctaattcatcagttctgttatgaagttctgtctatatgag |
33552223 |
T |
|
| Q |
220 |
cattaatagcagagaatgatagtacttttctaggccttaatttgactaaattttggctcaatttgttttatacagtatgctgaaagtgttgatacttcaa |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33552224 |
cattaatagcagagaatgatagtacttttctaggccttaatttgactaaattttggctcaatttgttttatacagtatgctgaaagtattgatacttcaa |
33552323 |
T |
|
| Q |
320 |
ccaaagtaatcagtctagcagaacatctcggtacccgaatatgtgatcatattccagaaacagctaataagctttctgaggatatggttaaatgtatatc |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33552324 |
ccaaagtaatcagtctagcagaacatctcggtacccgaatatgtgatcatattccagaaacagctaataagctttctgaggatatggttaaatgtatatc |
33552423 |
T |
|
| Q |
420 |
agctatatattacaaacttgcagacccacctatgactaatccgggcctttcatctcccagtacttcgataagtgccttttctattggcgatcaaggcgac |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33552424 |
agctatatattacaaacttgcagacccacctatgactaatccgggcctttcatctcccagtacttcgataagtgccttttctattggcgatcaaggcgac |
33552523 |
T |
|
| Q |
520 |
acgtggagtccagggttaagaaataactcctcttttgatgtacagttagataatcctttcaacgttgaaggattcaaggagtttagtgggccatataaca |
619 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33552524 |
acgtggagtccagggttaagaaataactcctcttttgatgtacagttagataatcctttcaacgttgaaggattcaaggagtttagtgggccatatagca |
33552623 |
T |
|
| Q |
620 |
ccat |
623 |
Q |
| |
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|||| |
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| T |
33552624 |
ccat |
33552627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 326 - 623
Target Start/End: Complemental strand, 7026268 - 7025959
Alignment:
| Q |
326 |
taatcagtctagcagaacatctcggtacccgaatatgtgatcatattccagaaacagctaataagctttctgaggatatggttaaatgtatatcagctat |
425 |
Q |
| |
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|||||||||| || |||||||||||||| ||||||| ||||||| |||| | | | ||||| ||||||||||||||||| ||||| ||||||||||| |
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| T |
7026268 |
taatcagtctggctgaacatctcggtacgcgaatatctgatcatgttccggtggaaccaaataaactttctgaggatatggtaaaatgcatatcagctat |
7026169 |
T |
|
| Q |
426 |
atattacaaacttgcagacccacctatgactaatccgggcctttcatctcccagtacttcgat---------aagtgccttttctattggcgatcaaggc |
516 |
Q |
| |
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||||| ||| ||||||||||| ||||||| |||| |||||||||||||||||| | || | || | |||||||||||| |||||||| |
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| T |
7026168 |
atattgcaagcttgcagaccctcctatgatacatcctggcctttcatctcccagttcgtcattgtcctcagcgagcggcttttctattggagatcaaggt |
7026069 |
T |
|
| Q |
517 |
gacacgtggagtccagggtt-aaga--aataactcctcttttgatgtacagttagataatcctttcaacgttgaaggattcaaggagtttagtgggccat |
613 |
Q |
| |
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|| | |||||||||| |||| |||| ||||||||||||||||||||| ||||| ||||||||| | ||||||||| |||||||||||||||| |||| |
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| T |
7026068 |
gatatgtggagtccaaggttcaagaataataactcctcttttgatgtaagtttagacaatcctttccatgttgaaggactcaaggagtttagtggaccat |
7025969 |
T |
|
| Q |
614 |
ataacaccat |
623 |
Q |
| |
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| | |||||| |
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|
| T |
7025968 |
acagcaccat |
7025959 |
T |
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