View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8438_high_27 (Length: 292)
Name: NF8438_high_27
Description: NF8438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8438_high_27 |
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| [»] scaffold0287 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 274
Target Start/End: Complemental strand, 3648708 - 3648451
Alignment:
| Q |
17 |
cacacggatctccttcattgccgcggatttgagtgtgttacttcaaatagtcacttcttttcccatggttattgtatccgaaaaatggggttgtggtggt |
116 |
Q |
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| T |
3648708 |
cacaaggatctccttcattgccgcggatttgagtgtgttacttcaaatagtcacttcttttcccatgtttattgtatccgaaaaatggggttgtggtggt |
3648609 |
T |
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| Q |
117 |
tattaactcatttccagacacaaataacaactatgtcagactcatcataaatggataagactcaaaaagtgagcttaattataaaatgtatctaccctta |
216 |
Q |
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| T |
3648608 |
tattaactcatttccagacacaaataacaactatgtcggactcatcataaatggataagactcaaaaagtgagcttaattataaaatgtatctaccctta |
3648509 |
T |
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| Q |
217 |
attaatggtagaactgactaaacaaacaactttgtaagtttttattgtatgagcgttt |
274 |
Q |
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| T |
3648508 |
attaatggtagaactgactaaacaaacaactttgtaagtttttattgtataagcgttt |
3648451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 3637166 - 3637109
Alignment:
| Q |
114 |
ggttattaactcatttccagacacaaataacaactatgtcagactcatcataaatgga |
171 |
Q |
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| T |
3637166 |
ggttattaactcagttccaaacacaaataacaactatgtcagactcaccagaaatgga |
3637109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 226
Target Start/End: Complemental strand, 3656485 - 3656409
Alignment:
| Q |
152 |
tcagactcatcataaatggataagactcaa--aaagtgagcttaattataaaatgtatctacccttaattaatggta |
226 |
Q |
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| T |
3656485 |
tcagactcatcataaacagataagattcttttaaagtgaacttaactataaaatgtatctaaccttaattaatggta |
3656409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0287 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 114 - 171
Target Start/End: Original strand, 8919 - 8976
Alignment:
| Q |
114 |
ggttattaactcatttccagacacaaataacaactatgtcagactcatcataaatgga |
171 |
Q |
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| T |
8919 |
ggttattaactcagttccaaacacaaataacaactatgtcagactcaccagaaatgga |
8976 |
T |
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