View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8438_high_31 (Length: 259)
Name: NF8438_high_31
Description: NF8438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8438_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 44175997 - 44175766
Alignment:
| Q |
17 |
ctttggaatacttggtcttgatccagttgagaccaaccgaggtaccatcctttaatttcttcacgccggtggaggccactcctttggtcttacctaaacc |
116 |
Q |
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| T |
44175997 |
ctttggaatacttggtcttgatccagttgagaccaaccgaggtaccatcctttaatttcttcacgccggtggaggccactcctttggtcttacctaaacc |
44175898 |
T |
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| Q |
117 |
ttccccaaacttttccttgtattttgttgtgctcttgttgttattggtatcagccatgatagggtctggaccattgtcccattggtctgcccaagaagtt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44175897 |
ttccccaaacttttccttgtattttgttgtgctcttgttgttattggtatcagccatgatagggtctggaccattgtcccattggtctgcccaagaagtt |
44175798 |
T |
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| Q |
217 |
ccatatgagttgtacacgttcccatgattcat |
248 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
44175797 |
ccatatgagttgtacacgttcccatgattcat |
44175766 |
T |
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