View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8438_high_35 (Length: 241)

Name: NF8438_high_35
Description: NF8438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8438_high_35
NF8438_high_35
[»] chr8 (16 HSPs)
chr8 (96-184)||(18143741-18143828)
chr8 (97-194)||(18232703-18232801)
chr8 (97-194)||(18242154-18242252)
chr8 (97-194)||(18251605-18251703)
chr8 (1-57)||(31575621-31575676)
chr8 (97-159)||(25037339-25037400)
chr8 (97-159)||(25051376-25051437)
chr8 (97-182)||(18883473-18883557)
chr8 (1-61)||(18143642-18143702)
chr8 (3-41)||(12925287-12925325)
chr8 (3-41)||(20044751-20044789)
chr8 (3-41)||(42712394-42712432)
chr8 (1-61)||(18232841-18232901)
chr8 (1-61)||(18242292-18242352)
chr8 (1-61)||(18251743-18251803)
chr8 (1-61)||(18883373-18883433)
[»] chr7 (11 HSPs)
chr7 (97-194)||(11634643-11634741)
chr7 (2-178)||(4306769-4306946)
chr7 (1-57)||(48711495-48711550)
chr7 (3-55)||(32817917-32817968)
chr7 (1-32)||(14777367-14777398)
chr7 (1-32)||(15229505-15229536)
chr7 (3-41)||(9736879-9736917)
chr7 (3-41)||(14634994-14635032)
chr7 (3-41)||(14644694-14644732)
chr7 (3-41)||(28344139-28344177)
chr7 (1-61)||(11634543-11634603)
[»] chr5 (17 HSPs)
chr5 (97-194)||(24290980-24291078)
chr5 (97-184)||(13815686-13815772)
chr5 (97-194)||(24244356-24244454)
chr5 (1-57)||(42732787-42732842)
chr5 (1-57)||(26652541-26652596)
chr5 (1-57)||(26924126-26924181)
chr5 (3-50)||(22457797-22457843)
chr5 (1-32)||(5600532-5600563)
chr5 (1-32)||(5610178-5610209)
chr5 (3-50)||(22448479-22448525)
chr5 (1-32)||(31150837-31150868)
chr5 (3-41)||(11223309-11223347)
chr5 (3-41)||(20035932-20035970)
chr5 (3-41)||(33955716-33955754)
chr5 (4-32)||(17553997-17554025)
chr5 (1-61)||(24244256-24244316)
chr5 (1-61)||(24290880-24290940)
[»] scaffold0010 (1 HSPs)
scaffold0010 (97-182)||(256748-256832)
[»] scaffold0021 (3 HSPs)
scaffold0021 (1-60)||(99909-99966)
scaffold0021 (1-60)||(180832-180889)
scaffold0021 (3-41)||(143102-143140)
[»] chr6 (3 HSPs)
chr6 (1-60)||(12414990-12415047)
chr6 (3-41)||(22066226-22066264)
chr6 (3-41)||(23884425-23884463)
[»] chr4 (4 HSPs)
chr4 (1-60)||(23622845-23622902)
chr4 (3-55)||(50516713-50516764)
chr4 (1-59)||(16490045-16490101)
chr4 (3-41)||(20884665-20884703)
[»] chr3 (8 HSPs)
chr3 (2-60)||(54624581-54624637)
chr3 (1-32)||(17530063-17530094)
chr3 (1-32)||(17535002-17535033)
chr3 (1-32)||(48978622-48978653)
chr3 (1-32)||(48988162-48988193)
chr3 (3-41)||(5385623-5385661)
chr3 (3-41)||(23486974-23487012)
chr3 (3-41)||(46305789-46305827)
[»] chr1 (5 HSPs)
chr1 (135-217)||(21633337-21633420)
chr1 (1-57)||(21633500-21633555)
chr1 (3-50)||(21919580-21919626)
chr1 (3-41)||(14272234-14272272)
chr1 (3-41)||(14282100-14282138)
[»] scaffold0053 (1 HSPs)
scaffold0053 (3-52)||(2410-2458)
[»] scaffold0247 (1 HSPs)
scaffold0247 (1-59)||(24520-24576)
[»] chr2 (8 HSPs)
chr2 (1-32)||(1790951-1790982)
chr2 (1-32)||(1800445-1800476)
chr2 (1-32)||(22632354-22632385)
chr2 (3-41)||(3396856-3396894)
chr2 (135-184)||(20011878-20011925)
chr2 (3-41)||(35877449-35877487)
chr2 (3-41)||(35884938-35884976)
chr2 (3-41)||(36724651-36724689)


Alignment Details
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 96 - 184
Target Start/End: Original strand, 18143741 - 18143828
Alignment:
Q  96 attttacaaacacaaactcaaatagatagagagacaagtaaatatagtgagagcttatggagtttgcttatatttgttgaagagcttga 184  Q
    |||||||||||||||||||||| |||||  || |||| |||||||||||||||||||||||||||| || | |||||||||||||||||    
T  18143741 attttacaaacacaaactcaaagagataatgatacaa-taaatatagtgagagcttatggagtttgattgtgtttgttgaagagcttga 18143828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 97 - 194
Target Start/End: Complemental strand, 18232801 - 18232703
Alignment:
Q  97 ttttacaaacacaaactcaaatagatagagagacaagtaaatatagtgagagcttatggagtttgcttatatttgttgaagagcttga--gagagaatga 194  Q
    ||||||||||||||||||||| |||||  || |||| |||||||||||| |||||||||||||||  | | |||||||||||||||||  ||||||||||    
T  18232801 ttttacaaacacaaactcaaagagataatgatacaa-taaatatagtgaaagcttatggagtttgaatgtgtttgttgaagagcttgattgagagaatga 18232703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 97 - 194
Target Start/End: Complemental strand, 18242252 - 18242154
Alignment:
Q  97 ttttacaaacacaaactcaaatagatagagagacaagtaaatatagtgagagcttatggagtttgcttatatttgttgaagagcttga--gagagaatga 194  Q
    ||||||||||||||||||||| |||||  || |||| |||||||||||| |||||||||||||||  | | |||||||||||||||||  ||||||||||    
T  18242252 ttttacaaacacaaactcaaagagataatgatacaa-taaatatagtgaaagcttatggagtttgaatgtgtttgttgaagagcttgattgagagaatga 18242154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 97 - 194
Target Start/End: Complemental strand, 18251703 - 18251605
Alignment:
Q  97 ttttacaaacacaaactcaaatagatagagagacaagtaaatatagtgagagcttatggagtttgcttatatttgttgaagagcttga--gagagaatga 194  Q
    ||||||||||||||||||||| |||||  || |||| |||||||||||| |||||||||||||||  | | |||||||||||||||||  ||||||||||    
T  18251703 ttttacaaacacaaactcaaagagataatgatacaa-taaatatagtgaaagcttatggagtttgaatgtgtttgttgaagagcttgattgagagaatga 18251605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 31575621 - 31575676
Alignment:
Q  1 ttctatctcaaactattaagcccaatagacttaagacctagctttacactttgtatg 57  Q
    |||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||    
T  31575621 ttctatctcaaactattaagcccaatagacttgagatctag-tttacactttgtatg 31575676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 25037339 - 25037400
Alignment:
Q  97 ttttacaaacacaaactcaaatagatagagagacaagtaaatatagtgagagcttatggagtt 159  Q
    |||||||||||||| ||||||  ||||||||||||| ||||||||||| ||||||||||||||    
T  25037339 ttttacaaacacaatctcaaaaggatagagagacaa-taaatatagtgtgagcttatggagtt 25037400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 25051376 - 25051437
Alignment:
Q  97 ttttacaaacacaaactcaaatagatagagagacaagtaaatatagtgagagcttatggagtt 159  Q
    |||||||||||||| ||||||  ||||||||||||| ||||||||||| ||||||||||||||    
T  25051376 ttttacaaacacaatctcaaaaggatagagagacaa-taaatatagtgtgagcttatggagtt 25051437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 182
Target Start/End: Original strand, 18883473 - 18883557
Alignment:
Q  97 ttttacaaacacaaactcaaatagatagagagacaagtaaatatagtgagagcttatggagtttgcttatatttgttgaagagctt 182  Q
    |||||||||||| |||||||| |||||  || |||| ||||| |||||||||||||||||||||| || | ||||| |||||||||    
T  18883473 ttttacaaacacgaactcaaagagataatgatacaa-taaatctagtgagagcttatggagtttgattgtgtttgtggaagagctt 18883557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 18143642 - 18143702
Alignment:
Q  1 ttctatctcaaactattaagcccaatagacttaagacctagctttacactttgtatggtga 61  Q
    |||||||||||||||||||||||||||||||| ||| |||  || || |||||||||||||    
T  18143642 ttctatctcaaactattaagcccaatagacttgagaactaaattcacgctttgtatggtga 18143702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 12925325 - 12925287
Alignment:
Q  3 ctatctcaaactattaagcccaatagacttaagacctag 41  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  12925325 ctatctcaaactattaagcccaatagacttgagatctag 12925287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 20044789 - 20044751
Alignment:
Q  3 ctatctcaaactattaagcccaatagacttaagacctag 41  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  20044789 ctatctcaaactattaagcccaatagacttgagatctag 20044751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 42712394 - 42712432
Alignment:
Q  3 ctatctcaaactattaagcccaatagacttaagacctag 41  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  42712394 ctatctcaaactattaagcccaatagacttgagatctag 42712432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 18232901 - 18232841
Alignment:
Q  1 ttctatctcaaactattaagcccaatagacttaagacctagctttacactttgtatggtga 61  Q
    ||||||||||||||||| |||||||||||||| ||| |||   | || |||||||||||||    
T  18232901 ttctatctcaaactattcagcccaatagacttgagaactaagatcactctttgtatggtga 18232841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 18242352 - 18242292
Alignment:
Q  1 ttctatctcaaactattaagcccaatagacttaagacctagctttacactttgtatggtga 61  Q
    ||||||||||||||||| |||||||||||||| ||| |||   | || |||||||||||||    
T  18242352 ttctatctcaaactattcagcccaatagacttgagaactaagatcactctttgtatggtga 18242292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 18251803 - 18251743
Alignment:
Q  1 ttctatctcaaactattaagcccaatagacttaagacctagctttacactttgtatggtga 61  Q
    ||||||||||||||||| |||||||||||||| ||| |||   | || |||||||||||||    
T  18251803 ttctatctcaaactattcagcccaatagacttgagaactaagatcactctttgtatggtga 18251743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 18883373 - 18883433
Alignment:
Q  1 ttctatctcaaactattaagcccaatagacttaagacctagctttacactttgtatggtga 61  Q
    ||||||||||||||||| |||||||||||||| ||| |||   | || |||||||||||||    
T  18883373 ttctatctcaaactattcagcccaatagacttgagaactaagatcactctttgtatggtga 18883433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 97 - 194
Target Start/End: Original strand, 11634643 - 11634741
Alignment:
Q  97 ttttacaaacacaaactcaaatagatagagagacaagtaaatatagtgagagcttatggagtttgcttatatttgttgaagagcttga--gagagaatga 194  Q
    ||||||||||||||||||||| |||||  || |||| |||||||||||| |||||||||||||||  | | |||||||||||||||||  ||||||||||    
T  11634643 ttttacaaacacaaactcaaagagataatgatacaa-taaatatagtgaaagcttatggagtttgaatgtgtttgttgaagagcttgattgagagaatga 11634741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 178
Target Start/End: Original strand, 4306769 - 4306946
Alignment:
Q  2 tctatctcaaactattaagcccaatagacttaagacctagctttacactttgtatggtga-nnnnnnnggtaagagaaataatatct----cagaagata 96  Q
    ||||| ||||||||||||||||||||||||| | |||||| |||||||||||||||||||        ||| ||| |||| ||||||    || |||| |    
T  4306769 tctatatcaaactattaagcccaatagacttgaaacctag-tttacactttgtatggtgatttgttttggttaga-aaatgatatctcaaacaaaagaga 4306866  T
Q  97 ttttacaaacacaaactcaaatagata--gagagacaagtaaatatagtgagagcttatggagtttgcttatatttgttgaaga 178  Q
    ||||||||| |||||||| || |||||  ||||||||   |||||||||||||| |||||||||||| |||| |||||||||||    
T  4306867 ttttacaaatacaaactc-aagagataatgagagaca---aaatatagtgagagattatggagtttgtttatgtttgttgaaga 4306946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 48711495 - 48711550
Alignment:
Q  1 ttctatctcaaactattaagcccaatagacttaagacctagctttacactttgtatg 57  Q
    ||||||||||||||||||||| |||||||||| ||||||||  ||||||||||||||    
T  48711495 ttctatctcaaactattaagcacaatagacttgagacctag-attacactttgtatg 48711550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 32817968 - 32817917
Alignment:
Q  3 ctatctcaaactattaagcccaatagacttaagacctagctttacactttgta 55  Q
    |||||| ||||||||||||||||||||||| ||| |||| |||||||||||||    
T  32817968 ctatcttaaactattaagcccaatagacttgagatctag-tttacactttgta 32817917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 14777398 - 14777367
Alignment:
Q  1 ttctatctcaaactattaagcccaatagactt 32  Q
    ||||||||||||||||||||||||||||||||    
T  14777398 ttctatctcaaactattaagcccaatagactt 14777367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 15229536 - 15229505
Alignment:
Q  1 ttctatctcaaactattaagcccaatagactt 32  Q
    ||||||||||||||||||||||||||||||||    
T  15229536 ttctatctcaaactattaagcccaatagactt 15229505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 9736917 - 9736879
Alignment:
Q  3 ctatctcaaactattaagcccaatagacttaagacctag 41  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  9736917 ctatctcaaactattaagcccaatagacttgagatctag 9736879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 14634994 - 14635032
Alignment:
Q  3 ctatctcaaactattaagcccaatagacttaagacctag 41  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  14634994 ctatctcaaactattaagcccaatagacttgagatctag 14635032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 14644694 - 14644732
Alignment:
Q  3 ctatctcaaactattaagcccaatagacttaagacctag 41  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  14644694 ctatctcaaactattaagcccaatagacttgagatctag 14644732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 28344177 - 28344139
Alignment:
Q  3 ctatctcaaactattaagcccaatagacttaagacctag 41  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  28344177 ctatctcaaactattaagcccaatagacttgagatctag 28344139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 11634543 - 11634603
Alignment:
Q  1 ttctatctcaaactattaagcccaatagacttaagacctagctttacactttgtatggtga 61  Q
    ||||||||||||||||| |||||||||||||| ||| |||   | || |||||||||||||    
T  11634543 ttctatctcaaactattcagcccaatagacttgagaactaagatcactctttgtatggtga 11634603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 97 - 194
Target Start/End: Original strand, 24290980 - 24291078
Alignment:
Q  97 ttttacaaacacaaactcaaatagatagagagacaagtaaatatagtgagagcttatggagtttgcttatatttgttgaagagcttga--gagagaatga 194  Q
    ||||||||||||||||||||| |||||  || |||| |||||||||||| |||||||||||||||  | | |||||||||||||||||  ||||||||||    
T  24290980 ttttacaaacacaaactcaaagagataatgatacaa-taaatatagtgaaagcttatggagtttgaatgtgtttgttgaagagcttgattgagagaatga 24291078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 97 - 184
Target Start/End: Original strand, 13815686 - 13815772
Alignment:
Q  97 ttttacaaacacaaactcaaatagatagagagacaagtaaatatagtgagagcttatggagtttgcttatatttgttgaagagcttga 184  Q
    ||||||||| ||| ||||||| |||||  || |||| |||||||||||||||||||||||||||| || | |||||||||||||||||    
T  13815686 ttttacaaatacagactcaaagagataatgatacaa-taaatatagtgagagcttatggagtttgattgtgtttgttgaagagcttga 13815772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 194
Target Start/End: Original strand, 24244356 - 24244454
Alignment:
Q  97 ttttacaaacacaaactcaaatagatagagagacaagtaaatatagtgagagcttatggagtttgcttatatttgttgaagagcttga--gagagaatga 194  Q
    |||||||| |||||||||||| |||||  || |||| |||||||||||| |||||||||||||||  | | |||||||||||||||||  ||||||||||    
T  24244356 ttttacaagcacaaactcaaagagataatgatacaa-taaatatagtgaaagcttatggagtttgaatgtgtttgttgaagagcttgattgagagaatga 24244454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 42732787 - 42732842
Alignment:
Q  1 ttctatctcaaactattaagcccaatagacttaagacctagctttacactttgtatg 57  Q
    |||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||    
T  42732787 ttctatctcaaactattaagcccaatagacttgagatctag-tttacactttgtatg 42732842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 26652596 - 26652541
Alignment:
Q  1 ttctatctcaaactattaagcccaatagacttaagacctagctttacactttgtatg 57  Q
    |||||||||||||||||||||||| ||||||| ||| |||| |||||||||||||||    
T  26652596 ttctatctcaaactattaagcccagtagacttgagatctag-tttacactttgtatg 26652541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 26924181 - 26924126
Alignment:
Q  1 ttctatctcaaactattaagcccaatagacttaagacctagctttacactttgtatg 57  Q
    |||||||||||||||||||||||| ||||||| ||| |||| |||||||||||||||    
T  26924181 ttctatctcaaactattaagcccagtagacttgagatctag-tttacactttgtatg 26924126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 22457797 - 22457843
Alignment:
Q  3 ctatctcaaactattaagcccaatagacttaagacctagctttacact 50  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||    
T  22457797 ctatctcaaactattaagcccaatagacttaagatctag-tttacact 22457843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 5600563 - 5600532
Alignment:
Q  1 ttctatctcaaactattaagcccaatagactt 32  Q
    ||||||||||||||||||||||||||||||||    
T  5600563 ttctatctcaaactattaagcccaatagactt 5600532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 5610209 - 5610178
Alignment:
Q  1 ttctatctcaaactattaagcccaatagactt 32  Q
    ||||||||||||||||||||||||||||||||    
T  5610209 ttctatctcaaactattaagcccaatagactt 5610178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 22448479 - 22448525
Alignment:
Q  3 ctatctcaaactattaagcccaatagacttaagacctagctttacact 50  Q
    |||||||||||||||||||||||||||||| ||| |||| ||||||||    
T  22448479 ctatctcaaactattaagcccaatagactttagatctag-tttacact 22448525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 31150837 - 31150868
Alignment:
Q  1 ttctatctcaaactattaagcccaatagactt 32  Q
    ||||||||||||||||||||||||||||||||    
T  31150837 ttctatctcaaactattaagcccaatagactt 31150868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 11223347 - 11223309
Alignment:
Q  3 ctatctcaaactattaagcccaatagacttaagacctag 41  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  11223347 ctatctcaaactattaagcccaatagacttgagatctag 11223309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 20035970 - 20035932
Alignment:
Q  3 ctatctcaaactattaagcccaatagacttaagacctag 41  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  20035970 ctatctcaaactattaagcccaatagacttgagatctag 20035932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 33955716 - 33955754
Alignment:
Q  3 ctatctcaaactattaagcccaatagacttaagacctag 41  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  33955716 ctatctcaaactattaagcccaatagacttgagatctag 33955754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 17553997 - 17554025
Alignment:
Q  4 tatctcaaactattaagcccaatagactt 32  Q
    |||||||||||||||||||||||||||||    
T  17553997 tatctcaaactattaagcccaatagactt 17554025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 24244256 - 24244316
Alignment:
Q  1 ttctatctcaaactattaagcccaatagacttaagacctagctttacactttgtatggtga 61  Q
    ||||||||||||||||| |||||||||||||| ||| |||   | || |||||||||||||    
T  24244256 ttctatctcaaactattcagcccaatagacttgagaactaagatcactctttgtatggtga 24244316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 24290880 - 24290940
Alignment:
Q  1 ttctatctcaaactattaagcccaatagacttaagacctagctttacactttgtatggtga 61  Q
    ||||||||||||||||| |||||||||||||| ||| |||   | || |||||||||||||    
T  24290880 ttctatctcaaactattcagcccaatagacttgagaactaagatcactctttgtatggtga 24290940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 182
Target Start/End: Complemental strand, 256832 - 256748
Alignment:
Q  97 ttttacaaacacaaactcaaatagatagagagacaagtaaatatagtgagagcttatggagtttgcttatatttgttgaagagctt 182  Q
    ||||||||||||||||||||| |||||  || | || |||||||||||||||||||||||||||| ||   |||||||||||||||    
T  256832 ttttacaaacacaaactcaaagagataatgatataa-taaatatagtgagagcttatggagtttgattgcgtttgttgaagagctt 256748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 99966 - 99909
Alignment:
Q  1 ttctatctcaaactattaagcccaatagacttaagacctagctttacactttgtatggtg 60  Q
    |||||||||||||||||||||||||||||||| ||| ||||  |||||||||||||||||    
T  99966 ttctatctcaaactattaagcccaatagacttgagatctag--ttacactttgtatggtg 99909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 180889 - 180832
Alignment:
Q  1 ttctatctcaaactattaagcccaatagacttaagacctagctttacactttgtatggtg 60  Q
    |||||||||||||||||||||||||||||||| ||| ||||  |||||||||||||||||    
T  180889 ttctatctcaaactattaagcccaatagacttgagatctag--ttacactttgtatggtg 180832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 143140 - 143102
Alignment:
Q  3 ctatctcaaactattaagcccaatagacttaagacctag 41  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  143140 ctatctcaaactattaagcccaatagacttgagatctag 143102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 12415047 - 12414990
Alignment:
Q  1 ttctatctcaaactattaagcccaatagacttaagacctagctttacactttgtatggtg 60  Q
    |||||||||||||||||||||||||||||||| ||| ||||  |||||||||||||||||    
T  12415047 ttctatctcaaactattaagcccaatagacttgagatctag--ttacactttgtatggtg 12414990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 22066264 - 22066226
Alignment:
Q  3 ctatctcaaactattaagcccaatagacttaagacctag 41  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  22066264 ctatctcaaactattaagcccaatagacttgagatctag 22066226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 23884463 - 23884425
Alignment:
Q  3 ctatctcaaactattaagcccaatagacttaagacctag 41  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  23884463 ctatctcaaactattaagcccaatagacttgagatctag 23884425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 23622902 - 23622845
Alignment:
Q  1 ttctatctcaaactattaagcccaatagacttaagacctagctttacactttgtatggtg 60  Q
    |||||||||||||||||||||||||||||||| ||| ||||  |||||||||||||||||    
T  23622902 ttctatctcaaactattaagcccaatagacttgagatctag--ttacactttgtatggtg 23622845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 50516713 - 50516764
Alignment:
Q  3 ctatctcaaactattaagcccaatagacttaagacctagctttacactttgta 55  Q
    |||||||||||||||||||||||||||||| ||| |||  |||||||||||||    
T  50516713 ctatctcaaactattaagcccaatagacttgagatcta-ttttacactttgta 50516764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 16490045 - 16490101
Alignment:
Q  1 ttctatctcaaactattaagcccaatagacttaagacctagctttacactttgtatggt 59  Q
    ||||||||||||||||||||||||||| |||| ||| ||||  |||| |||||||||||    
T  16490045 ttctatctcaaactattaagcccaataaacttgagatctag--ttacgctttgtatggt 16490101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 20884665 - 20884703
Alignment:
Q  3 ctatctcaaactattaagcccaatagacttaagacctag 41  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  20884665 ctatctcaaactattaagcccaatagacttgagatctag 20884703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 54624637 - 54624581
Alignment:
Q  2 tctatctcaaactattaagcccaatagacttaagacctagctttacactttgtatggtg 60  Q
    ||||||||||||||||||||||||||||||| ||| ||||  |||||||||||||||||    
T  54624637 tctatctcaaactattaagcccaatagacttgagatctag--ttacactttgtatggtg 54624581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 17530063 - 17530094
Alignment:
Q  1 ttctatctcaaactattaagcccaatagactt 32  Q
    ||||||||||||||||||||||||||||||||    
T  17530063 ttctatctcaaactattaagcccaatagactt 17530094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 17535002 - 17535033
Alignment:
Q  1 ttctatctcaaactattaagcccaatagactt 32  Q
    ||||||||||||||||||||||||||||||||    
T  17535002 ttctatctcaaactattaagcccaatagactt 17535033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 48978653 - 48978622
Alignment:
Q  1 ttctatctcaaactattaagcccaatagactt 32  Q
    ||||||||||||||||||||||||||||||||    
T  48978653 ttctatctcaaactattaagcccaatagactt 48978622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 48988193 - 48988162
Alignment:
Q  1 ttctatctcaaactattaagcccaatagactt 32  Q
    ||||||||||||||||||||||||||||||||    
T  48988193 ttctatctcaaactattaagcccaatagactt 48988162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 5385661 - 5385623
Alignment:
Q  3 ctatctcaaactattaagcccaatagacttaagacctag 41  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  5385661 ctatctcaaactattaagcccaatagacttgagatctag 5385623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 23487012 - 23486974
Alignment:
Q  3 ctatctcaaactattaagcccaatagacttaagacctag 41  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  23487012 ctatctcaaactattaagcccaatagacttgagatctag 23486974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 46305789 - 46305827
Alignment:
Q  3 ctatctcaaactattaagcccaatagacttaagacctag 41  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  46305789 ctatctcaaactattaagcccaatagacttgagatctag 46305827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 217
Target Start/End: Complemental strand, 21633420 - 21633337
Alignment:
Q  135 aaatatagtgagagcttatggagtttgcttatatttgttgaagagcttg--agagagaatgaaggctttttgctttgagagagat 217  Q
    |||||||||||||| |||||||||||| || | |||||| |||||||||  |||||||||||  || ||||||||||||||||||    
T  21633420 aaatatagtgagagattatggagtttgtttgtgtttgttaaagagcttgatagagagaatgattgc-ttttgctttgagagagat 21633337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 21633555 - 21633500
Alignment:
Q  1 ttctatctcaaactattaagcccaatagacttaagacctagctttacactttgtatg 57  Q
    |||||||||||||||||| ||||||||||||| ||||||||  ||||||||||||||    
T  21633555 ttctatctcaaactattatgcccaatagacttgagacctag-attacactttgtatg 21633500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 21919580 - 21919626
Alignment:
Q  3 ctatctcaaactattaagcccaatagacttaagacctagctttacact 50  Q
    |||||||||||||||||||||||||||||| ||| |||| ||||||||    
T  21919580 ctatctcaaactattaagcccaatagacttgagaactag-tttacact 21919626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 14272234 - 14272272
Alignment:
Q  3 ctatctcaaactattaagcccaatagacttaagacctag 41  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  14272234 ctatctcaaactattaagcccaatagacttgagatctag 14272272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 14282100 - 14282138
Alignment:
Q  3 ctatctcaaactattaagcccaatagacttaagacctag 41  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  14282100 ctatctcaaactattaagcccaatagacttgagatctag 14282138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 2410 - 2458
Alignment:
Q  3 ctatctcaaactattaagcccaatagacttaagacctagctttacacttt 52  Q
    |||||||||||||||||||||||||||||| ||| |||| ||||||||||    
T  2410 ctatctcaaactattaagcccaatagacttgagatctag-tttacacttt 2458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 24576 - 24520
Alignment:
Q  1 ttctatctcaaactattaagcccaatagacttaagacctagctttacactttgtatggt 59  Q
    |||||| |||||||||||| |||||||||||| ||| ||||  ||||||||||||||||    
T  24576 ttctatatcaaactattaaacccaatagacttgagatctag--ttacactttgtatggt 24520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 1790982 - 1790951
Alignment:
Q  1 ttctatctcaaactattaagcccaatagactt 32  Q
    ||||||||||||||||||||||||||||||||    
T  1790982 ttctatctcaaactattaagcccaatagactt 1790951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 1800476 - 1800445
Alignment:
Q  1 ttctatctcaaactattaagcccaatagactt 32  Q
    ||||||||||||||||||||||||||||||||    
T  1800476 ttctatctcaaactattaagcccaatagactt 1800445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 22632385 - 22632354
Alignment:
Q  1 ttctatctcaaactattaagcccaatagactt 32  Q
    ||||||||||||||||||||||||||||||||    
T  22632385 ttctatctcaaactattaagcccaatagactt 22632354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 3396894 - 3396856
Alignment:
Q  3 ctatctcaaactattaagcccaatagacttaagacctag 41  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  3396894 ctatctcaaactattaagcccaatagacttgagatctag 3396856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 20011878 - 20011925
Alignment:
Q  135 aaatatagtgagagcttatggagtttgcttatatttgttgaagagcttga 184  Q
    |||||||||||||  ||||||||||||||||| |||||||||||| ||||    
T  20011878 aaatatagtgaga--ttatggagtttgcttatgtttgttgaagagattga 20011925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 35877487 - 35877449
Alignment:
Q  3 ctatctcaaactattaagcccaatagacttaagacctag 41  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  35877487 ctatctcaaactattaagcccaatagacttgagatctag 35877449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 35884976 - 35884938
Alignment:
Q  3 ctatctcaaactattaagcccaatagacttaagacctag 41  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  35884976 ctatctcaaactattaagcccaatagacttgagatctag 35884938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 36724689 - 36724651
Alignment:
Q  3 ctatctcaaactattaagcccaatagacttaagacctag 41  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  36724689 ctatctcaaactattaagcccaatagacttgagatctag 36724651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University