View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8438_high_36 (Length: 239)

Name: NF8438_high_36
Description: NF8438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8438_high_36
NF8438_high_36
[»] chr3 (1 HSPs)
chr3 (1-223)||(32598371-32598593)
[»] chr4 (2 HSPs)
chr4 (13-85)||(42624941-42625013)
chr4 (11-94)||(24959883-24959966)
[»] chr2 (1 HSPs)
chr2 (23-87)||(24578108-24578172)
[»] chr8 (1 HSPs)
chr8 (15-94)||(29149372-29149452)
[»] chr7 (2 HSPs)
chr7 (22-135)||(39104066-39104175)
chr7 (13-94)||(43200432-43200513)
[»] chr5 (1 HSPs)
chr5 (12-73)||(14433528-14433589)
[»] scaffold0045 (1 HSPs)
scaffold0045 (8-41)||(25565-25598)


Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 32598371 - 32598593
Alignment:
Q  1 gtagaagaggtctaaaacaaattttaatatatgagacatttttagtctatatatgaagcctttttgtttataatatctaaggaaaaatatttttgttttg 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  32598371 gtagaagaggtctaaaacaaattttaatatatgaggcatttttagtctatatatgaagcctttttgtttataatatctaaggaaaaatgtttttgttttg 32598470  T
Q  101 ttgggaagcttaatgcgagggctttagtagccttatcattgtactgatatccctaactctatgtatgtatgtgtacatgtcttactttgccgacttctaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32598471 ttgggaagcttaatgcgagggctttagtagccttatcattgtaccgatatccctaactctatgtatgtatgtgtacatgtcttactttgccgacttctaa 32598570  T
Q  201 tggaacacaaacaagttgaggat 223  Q
    |||||||||||||||||| ||||    
T  32598571 tggaacacaaacaagttggggat 32598593  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 42625013 - 42624941
Alignment:
Q  13 taaaacaaattttaatatatgagacatttttagtctatatatgaagcctttttgtttataatatctaaggaaa 85  Q
    |||| |||| ||||||||||||||||||||||||||  |||||| | |||||||||||||| |||||| ||||    
T  42625013 taaagcaaaatttaatatatgagacatttttagtctgcatatgatggctttttgtttataaaatctaatgaaa 42624941  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 24959883 - 24959966
Alignment:
Q  11 tctaaaacaaattttaatatatgagacatttttagtctatatatgaagcctttttgtttataatatctaaggaaaaatattttt 94  Q
    ||||||||||||||||||||| |   | ||||||||  ||||||||   |||||| ||||||| |||||| |||||||||||||    
T  24959883 tctaaaacaaattttaatatacggagcctttttagttgatatatgagatctttttatttataaaatctaatgaaaaatattttt 24959966  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 24578172 - 24578108
Alignment:
Q  23 tttaatatatgagacatttttagtctatatatgaagcctttttgtttataatatctaaggaaaaa 87  Q
    ||||||||||||| |||||||||| | ||||||||| |||||||||||||| |||||| ||||||    
T  24578172 tttaatatatgaggcatttttagtttgtatatgaagtctttttgtttataaaatctaatgaaaaa 24578108  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 29149372 - 29149452
Alignment:
Q  15 aaacaaattttaatatatgagacatttttagtctatatatgaagcctttttgtttat-aatatctaaggaaaaatattttt 94  Q
    ||||||||||||||| ||||||| |||||| | | ||||||| |||||||| ||||| || |||||| |||||||||||||    
T  29149372 aaacaaattttaataaatgagacctttttaatttgtatatgaggcctttttatttataaaaatctaatgaaaaatattttt 29149452  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 135
Target Start/End: Original strand, 39104066 - 39104175
Alignment:
Q  22 ttttaatatatgagacatttttagtctatatatgaagcctttttgtttataatatctaaggaaaaatatttttgttttgttgggaagcttaatgcgaggg 121  Q
    |||||||||||| |   ||||| |||| ||||||| || ||||||||||||| || ||| ||||||||||    ||||||||| | || ||| |||||||    
T  39104066 ttttaatatatgtggtcttttttgtctgtatatgaggcatttttgtttataaaatataatgaaaaatatt----ttttgttggtaggcctaaagcgaggg 39104161  T
Q  122 ctttagtagcctta 135  Q
    ||||||||||||||    
T  39104162 ctttagtagcctta 39104175  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 43200513 - 43200432
Alignment:
Q  13 taaaacaaattttaatatatgagacatttttagtctatatatgaagcctttttgtttataatatctaaggaaaaatattttt 94  Q
    ||||| ||||||||||||||||||  |||||||||  || |||| |  ||||||||||||| || ||| |||||||| ||||    
T  43200513 taaaataaattttaatatatgagatttttttagtccgtaaatgaggaatttttgtttataaaatataatgaaaaataatttt 43200432  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 14433528 - 14433589
Alignment:
Q  12 ctaaaacaaattttaatatatgagacatttttagtctatatatgaagcctttttgtttataa 73  Q
    |||||||| ||||||||||| |||||||||||||||| |||| ||  || ||||||||||||    
T  14433528 ctaaaacatattttaatatacgagacatttttagtctgtatacgagaccattttgtttataa 14433589  T

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Target: scaffold0045 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 25565 - 25598
Alignment:
Q  8 aggtctaaaacaaattttaatatatgagacattt 41  Q
    ||||| ||||||||||||||||||||||||||||    
T  25565 aggtccaaaacaaattttaatatatgagacattt 25598  T

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