View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8438_high_38 (Length: 230)

Name: NF8438_high_38
Description: NF8438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8438_high_38
NF8438_high_38
[»] chr4 (2 HSPs)
chr4 (20-216)||(10124260-10124456)
chr4 (25-215)||(28649862-28650052)
[»] chr2 (3 HSPs)
chr2 (22-215)||(21422312-21422509)
chr2 (22-212)||(21393002-21393192)
chr2 (76-179)||(1975176-1975279)
[»] chr3 (4 HSPs)
chr3 (22-212)||(25040650-25040840)
chr3 (25-215)||(25044385-25044575)
chr3 (76-173)||(54479360-54479457)
chr3 (22-211)||(25042801-25042987)
[»] chr1 (1 HSPs)
chr1 (22-215)||(24690576-24690769)
[»] chr7 (1 HSPs)
chr7 (136-209)||(39600467-39600540)


Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 10124456 - 10124260
Alignment:
Q  20 tcaacaccatgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgc 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  10124456 tcaacaccatgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaaaccggtaattgc 10124357  T
Q  120 tgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagtataat 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10124356 tgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagtataat 10124260  T

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Target: chr4; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 25 - 215
Target Start/End: Complemental strand, 28650052 - 28649862
Alignment:
Q  25 accatgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgaga 124  Q
    |||||||||||||||||||||  || ||||||| |||| ||||||   |   |||| || |||||||  ||||||  |||||||||| ||||||||||||    
T  28650052 accatgcatgatagggcaccatggattttgatgaatcctagattgccaagaagtgttcaatgcaatcgtgaaaacaatgtgaagccgataattgctgaga 28649953  T
Q  125 agaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagtataa 215  Q
    ||||||||||||| |||||||||||| ||||| | |||||||||||||||||||| || ||| |||||||||| |||||||||||||||||    
T  28649952 agaaaaagaatattaattggttgtttttgttgttgggacaaatgcttggttgttgcaatcttaaacaattgaagtatttttgcaagtataa 28649862  T

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Target: chr2 (Bit Score: 113; Significance: 2e-57; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 22 - 215
Target Start/End: Original strand, 21422312 - 21422509
Alignment:
Q  22 aacaccatgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctg 121  Q
    |||| ||||||||||||||||||||||| ||||||| |||||| ||||   || |||||||||||||||||||||||| |||| |||||  |||||||||    
T  21422312 aacaacatgcatgatagggcaccagagaatttgatgaatccaaaattgcctaaatgtgtgcattgcaatcaagaaaacagtgtcaagccaataattgctg 21422411  T
Q  122 agaagaaaaagaatatcaattggttgtttctgttgct----aggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagtataa 215  Q
    ||||||||||||||||| |||||||||||||||||||     |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||    
T  21422412 agaagaaaaagaatatctattggttgtttctgttgctggccgggacaaatgcttggttgttgcaagcttgaacatttgaagtatttttgcaagtataa 21422509  T

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Target: chr2; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 22 - 212
Target Start/End: Original strand, 21393002 - 21393192
Alignment:
Q  22 aacaccatgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctg 121  Q
    |||||||||||||||||||||||| |||  |||||| |||||||| ||   |  ||||  |||||||||||||||||| ||||||| ||||||||||| |    
T  21393002 aacaccatgcatgatagggcaccaaagatcttgatgaatccaagactgccaagatgtgcacattgcaatcaagaaaacagtgtgaaaccggtaattgccg 21393101  T
Q  122 agaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagta 212  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||    
T  21393102 agaagaaaaagaatatcaattggttgtttctattgctgggacaaatgctcggttgttgcaagcttgaacaattgaagtatttttgcaagta 21393192  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 179
Target Start/End: Complemental strand, 1975279 - 1975176
Alignment:
Q  76 tgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggtt 175  Q
    ||||| |||||||||||| ||||  ||||||| || ||||||||| |||||||||||| |||||||||||||||| ||||| | ||||||||||||||||    
T  1975279 tgtgtacattgcaatcaaaaaaatagtgtgaaacctgtaattgctaagaagaaaaagagtatcaattggttgtttatgttgatgggacaaatgcttggtt 1975180  T
Q  176 gttg 179  Q
    ||||    
T  1975179 gttg 1975176  T

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Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 22 - 212
Target Start/End: Complemental strand, 25040840 - 25040650
Alignment:
Q  22 aacaccatgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctg 121  Q
    |||||||||||||||||||||||| | | ||||||| |||||| ||||   || ||| |||||||||||||||||||  |||| || ||||| |||||||    
T  25040840 aacaccatgcatgatagggcaccacaaattttgatgaatccaaaattgccaaaatgtttgcattgcaatcaagaaaatagtgttaaaccggtgattgctg 25040741  T
Q  122 agaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagta 212  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||| ||||||||||||||||| ||||||||||||||    
T  25040740 agaagaaaaagaatatcaattggttgtttctgttgctgggacaaataattggttgttgcaagcttgaacaattgaagtatttttgcaagta 25040650  T

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Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 25 - 215
Target Start/End: Complemental strand, 25044575 - 25044385
Alignment:
Q  25 accatgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgaga 124  Q
    |||||||||||||||||||| |  | ||||||| |||||||||||   |  ||||||||||||||  |||||||| ||||||||||| ||||||| ||||    
T  25044575 accatgcatgatagggcaccgggaattttgatgaatccaagattgccaagatgtgtgcattgcaacaaagaaaacagtgtgaagccgataattgccgaga 25044476  T
Q  125 agaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagtataa 215  Q
    |||| |||||||||||||||||||||||| || | ||||||||||| |||||||| || ||| |||||||||| |||||||||||||||||    
T  25044475 agaagaagaatatcaattggttgtttctgctgttgggacaaatgctgggttgttgcaatcttaaacaattgaagtatttttgcaagtataa 25044385  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 76 - 173
Target Start/End: Original strand, 54479360 - 54479457
Alignment:
Q  76 tgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttgg 173  Q
    |||||||| || |||||| ||||| |||||||||||||||||||||| ||||||  || |||||| ||| ||||||||||  ||||||||||||||||    
T  54479360 tgtgtgcactgtaatcaacaaaacagtgtgaagccggtaattgctgacaagaaacggagtatcaactggctgtttctgttattaggacaaatgcttgg 54479457  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 211
Target Start/End: Complemental strand, 25042987 - 25042801
Alignment:
Q  22 aacaccatgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctg 121  Q
    |||||||| |||||||||||||||  |  ||||||||||||||||||| |||||||||||||||   ||| ||| |   ||||||| | |||| ||||      
T  25042987 aacaccatacatgatagggcaccaacgcttttgatgtatccaagattgctgaagtgtgtgcatt--tatcgagata---gtgtgaaactggtacttgcca 25042893  T
Q  122 agaagaaaaag--aatatcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagt 211  Q
    |||||||||||  |||||||| | | || |||||||| | |||||||||||||| || || |||||||||| | |||||||| ||| |||||    
T  25042892 agaagaaaaagataatatcaactagatgcttctgttgttgggacaaatgcttggctgctgcaagcttgaaccactgaaatatattttcaagt 25042801  T

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Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 22 - 215
Target Start/End: Complemental strand, 24690769 - 24690576
Alignment:
Q  22 aacaccatgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctg 121  Q
    |||||||||||||||||||||  | ||| ||||||| |||||||||||   || ||||| |||||||||||||||| |  ||||||||||||||||  ||    
T  24690769 aacaccatgcatgatagggcaagaaagattttgatgaatccaagattgtcaaaatgtgtacattgcaatcaagaaaccaatgtgaagccggtaattattg 24690670  T
Q  122 agaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagtataa 215  Q
    |||||||||||||||||||||| ||||||||||| ||  |||||||| |||||||||| |||| |||| |||| |  |||||||||||||||||    
T  24690669 agaagaaaaagaatatcaattgattgtttctgtttctgagacaaatgattggttgttgcaagcatgaataattaaggtatttttgcaagtataa 24690576  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 209
Target Start/End: Complemental strand, 39600540 - 39600467
Alignment:
Q  136 atcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaa 209  Q
    ||||||||||||||| ||||| | || || ||| |||| ||||| |||||| |||| ||||||||||| |||||    
T  39600540 atcaattggttgtttttgttgttgggtcagatgattgggtgttgcaagcttcaacatttgaaatatttctgcaa 39600467  T

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