View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8438_high_5 (Length: 545)
Name: NF8438_high_5
Description: NF8438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8438_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Complemental strand, 36805331 - 36804805
Alignment:
| Q |
1 |
cattcatatcatatgatctttatagtatttgagtgaagcaattaagtcaaagtaagataccttatcattttcacaactgtttgtggcttattggtgaaaa |
100 |
Q |
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| T |
36805331 |
cattcatatcatatgatctttatagtatttgactgaagcaattaagtcaaagtaagataccttatcattttcacaactgtttgtggcttattggtgaaaa |
36805232 |
T |
|
| Q |
101 |
tggaaaagaaagtggcagcgattgtcctctgcagcaaatcgtgaaggtgctaacaattattttgttgggtcagtatatataaagtcttgctttgacttta |
200 |
Q |
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| T |
36805231 |
tggaaaagaaagtggcagcgattttcctctgcagcaaatcgtgaaggtgctaacaattattttgttgggtcagtatatataaagtcttgctttggcttta |
36805132 |
T |
|
| Q |
201 |
attaaaccttcagattagttgatccttaaattggatattgagtttctaaccnnnnnnngaa-ggtaggagaggcatcgttcaaggccatgtttcaacata |
299 |
Q |
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| T |
36805131 |
attaaaccttcagattagttgatccttaaattggatattgagtttctaacaaaaaaaaaaaaggtaggagaggcatcattcaaggccatgtttcaacata |
36805032 |
T |
|
| Q |
300 |
tcaaagcaagagcttgcaattagaatcaatttaaaaatagaataaaattattagaaattgtgatgttttagttttacaatcaatcgtaaggttttggttt |
399 |
Q |
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| T |
36805031 |
tcaaagcaagagcttgcaattagaatcaatttaaaaatagaataaaattattagaaattgtgatgttttagttttacaatcaatcgtaaggttttggttt |
36804932 |
T |
|
| Q |
400 |
tgtaaaaatagattgatgttgtgattcattttatgatggatatatgtccattaaacatgcttaataatactagatattttaacacttaacattgtccatt |
499 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36804931 |
tgtaaaaatagattgatcttgtgattcattttatgatggatatatgtccattaaacatgcttaataatactagatattttaacacttaacattgtccatt |
36804832 |
T |
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| Q |
500 |
gatttgtgtagaatacagtgtaggttc |
526 |
Q |
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| T |
36804831 |
gatttgtgtagaatacaatgtaggttc |
36804805 |
T |
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