View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8438_low_1 (Length: 1403)
Name: NF8438_low_1
Description: NF8438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8438_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 1177; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 1177; E-Value: 0
Query Start/End: Original strand, 20 - 1388
Target Start/End: Complemental strand, 6917563 - 6916191
Alignment:
| Q |
20 |
aatcaacctcgccgcgctcaatcttgatggcctggaacttgcctttctggacagttgtgacctctgtatggggagcgaagtgctcccggcttcaaactcg |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6917563 |
aatcaacctcgccgcgctcaatcttgatggcctggaacttgccattctggacagttgtgacctctgtatggggagcgaagtgctcccggcttcaaactcg |
6917464 |
T |
|
| Q |
120 |
tctccggatagtacctgtttcctgttgcagaactggtgtgtgttctcgttgggctcaactgttgccgggaacgaacacggcttcagat-aattcttgggc |
218 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
6917463 |
tctccggatagtacctgttccctgttgcagaactggtgtgtgttctcgttgggctcaactgttgccgggaacgaacacggcttcagatcaattcttgggc |
6917364 |
T |
|
| Q |
219 |
gg--tctcctgggcggctaggcttccacgagcacagcacagctcaaactgattgccagatacgggagcggactcgtctcaaactgctgcggcttcaggat |
316 |
Q |
| |
|
|| ||||||||| ||||| ||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6917363 |
ggcctctcctgggtggctacgcttccacgagcatggcacagctcaaactgtttgccagatacgggagcagactcgtctcaaactgctgcggcttcaggat |
6917264 |
T |
|
| Q |
317 |
caatctctgagcgtgtccatgggaaactcggggtgctgtcaatggcg-------agctttgactaatgaaggcggttcaacggagacttcactgtcgccg |
409 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
6917263 |
caatctctgagcgtgtctgtgggaaactcggcgtgctgtcaatggcgctgctcgagctttgactaatgaaggcggtttggcggagacttcactgtcgccg |
6917164 |
T |
|
| Q |
410 |
ccgtgaatgatgctaaactgaattttcttccaacagttcttctgcctattgagattcagaggaacattgctgcgtctgtcactgtgtgactgtttctaaa |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6917163 |
ccgtgaatgatgctaaactgaattttcttccaacagttcttctgcctattgagattcagaggaacattgctgcgtctgtcactgtgtgactgtttctaga |
6917064 |
T |
|
| Q |
510 |
ccttagctttgtgaaggtgataattcagaatgaatcaatgaactccaaattgttgaaaggacttggatatggccgcccttttggccagaccggaacaata |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6917063 |
ccttagctttgtgaaggtgataattcagaatgaatcaatgaactccaaattgttgaaaggacttggatatggtcgcccttttggccagaccggaacaata |
6916964 |
T |
|
| Q |
610 |
tacaagaagcctgccatgattatcacctcatcacagatttacagtcggaagtgcattgataagtgaacaaaaatctaaactagctgaacaatgtatgata |
709 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6916963 |
tacaagaagcctgccatgattatcacctcatcaca--tttacagtcagaagtgcattgataagtgaacaaaaatctaaactagctgaacaatgtatgata |
6916866 |
T |
|
| Q |
710 |
gaattgaaaatgagcatgtatgtgtcaactaaaatataagaaaacgcaaatatatgataaatttaatattaaatcaagtttcccaataaaaacattggag |
809 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6916865 |
gaattgaaaatgagcatgtatgtgtcaactaaaatataagaaaacgcaaatatatgataaatttaatgttaaatcaagtttcccaataaaaacattggag |
6916766 |
T |
|
| Q |
810 |
tgacaccaaattgtacactatcacaattatagctactttttatttgctttcaaaattttgttgacccnnnnnnntgaaccaaaactacaattcttttttc |
909 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
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|
| T |
6916765 |
tgacaccaaattgtacactatcacaattatagctactttttatttgctttcaaaattttgttgacccaaaaaaatgaaccaaaaccacaattcttttttc |
6916666 |
T |
|
| Q |
910 |
tagataactacccccaataaatttaggaccgtgtacttgaaaggccatatcattcagctgccttattgcccttgtatgtgtttatcaatcgggtctgtac |
1009 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6916665 |
cagataactacccccaaaaaatttaggaccgtgtacttgaaaggccatatcattcagctgccttattgcccttgtatgtgtttatcaatcgggtctgtac |
6916566 |
T |
|
| Q |
1010 |
atcatgagaaacacgtgaatgttccttatattccattgtgaattcaccctttccctgtgtcatcgaacgaatagccgtagaatacccaaacatattgtta |
1109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6916565 |
atcatgagaaacacgtgaatgttccttatattccattgtgaattcaccctttccctgtgtcatcgaacgaatagccgtagaatacccaaacatattgtta |
6916466 |
T |
|
| Q |
1110 |
agagggacatgagctgttatgacagaatcatcttcatcctgatcattgccaacaatcacaccttttctcttgttgaggtcaccagcaacagctccctgaa |
1209 |
Q |
| |
|
||||| ||||||||||| |||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6916465 |
agaggcacatgagctgtaatgacagaataatcttcgtcctgaacattgccaacaatcacaccttttctcttgttgaggtcaccagcaacagctccctgaa |
6916366 |
T |
|
| Q |
1210 |
attctgttggtactttcagttcaacaagcataacaggttctaatataactggtctggaagctgtgtaacactctctaaaagcatagatagaagccaactt |
1309 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6916365 |
attctgttggtactttcagttc----agcataacaggttctaatataactggtctggaagctgtgtaacactctctaaaagcatagatagaagccaactt |
6916270 |
T |
|
| Q |
1310 |
aaaggcaagttcactggaatcaacatcatgagcagcaccatctgtcaagacaactcggagattttcaactggatgtcca |
1388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6916269 |
aaaggcaagttcactggaatcaacatcatgagcagcaccatctgtcaagacaactcggagattttgaactggatgtcca |
6916191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 609 - 697
Target Start/End: Complemental strand, 6890724 - 6890644
Alignment:
| Q |
609 |
atacaagaagcctgccatgattatcacctcatcacagatttacagtcggaagtgcattgataagtgaacaaaaatctaaactagctgaa |
697 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||| ||||| |||||| |||||||| ||||||||||||||||||| |
|
|
| T |
6890724 |
atacaagaagcctgccatgaatatcacctcat--------tacagtcagaagtacattgacaagtgaaccaaaatctaaactagctgaa |
6890644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 8e-43; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 8e-43
Query Start/End: Original strand, 1283 - 1388
Target Start/End: Original strand, 15038055 - 15038160
Alignment:
| Q |
1283 |
tctaaaagcatagatagaagccaacttaaaggcaagttcactggaatcaacatcatgagcagcaccatctgtcaagacaactcggagattttcaactgga |
1382 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
15038055 |
tctaaaagcatagatagaagccatcttaaaggcaagctcactggaatcaacagcatgagcagcaccatctgtcaagacaactcggagattttcaacggga |
15038154 |
T |
|
| Q |
1383 |
tgtcca |
1388 |
Q |
| |
|
|||||| |
|
|
| T |
15038155 |
tgtcca |
15038160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 8e-40
Query Start/End: Original strand, 958 - 1066
Target Start/End: Original strand, 15035941 - 15036049
Alignment:
| Q |
958 |
atcattcagctgccttattgcccttgtatgtgtttatcaatcgggtctgtacatcatgagaaacacgtgaatgttccttatattccattgtgaattcacc |
1057 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
15035941 |
atcattcaggtgccttattgcccttgtatgcgtttaccaattgggtctgtacatcatgagaaacaggtgaatgttccttatattccattgtaaattcacc |
15036040 |
T |
|
| Q |
1058 |
ctttccctg |
1066 |
Q |
| |
|
||||||||| |
|
|
| T |
15036041 |
ctttccctg |
15036049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 1178 - 1281
Target Start/End: Original strand, 15037825 - 15037928
Alignment:
| Q |
1178 |
cttgttgaggtcaccagcaacagctccctgaaattctgttggtactttcagttcaacaagcataacaggttctaatataactggtctggaagctgtgtaa |
1277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||| ||||||||| |||||||||||| |||||| |
|
|
| T |
15037825 |
cttgttgaggtcaccagcaacagctccctgaaattcatttggtacttttagctcaacaagcataacaggctctaatatagttggtctggaagcagtgtaa |
15037924 |
T |
|
| Q |
1278 |
cact |
1281 |
Q |
| |
|
|||| |
|
|
| T |
15037925 |
cact |
15037928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 1063 - 1117
Target Start/End: Original strand, 15036138 - 15036192
Alignment:
| Q |
1063 |
cctgtgtcatcgaacgaatagccgtagaatacccaaacatattgttaagagggac |
1117 |
Q |
| |
|
|||||||||||||||||| ||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
15036138 |
cctgtgtcatcgaacgaagagctgtagagtacccaaacatattgttaagagggac |
15036192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1116 - 1178
Target Start/End: Original strand, 15037676 - 15037738
Alignment:
| Q |
1116 |
acatgagctgttatgacagaatcatcttcatcctgatcattgccaacaatcacaccttttctc |
1178 |
Q |
| |
|
||||||||| | |||||||| |||||| |||||||||||||||||||||||| ||| |||||| |
|
|
| T |
15037676 |
acatgagctataatgacagagtcatctccatcctgatcattgccaacaatcataccctttctc |
15037738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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