View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8438_low_10 (Length: 440)
Name: NF8438_low_10
Description: NF8438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8438_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 38365674 - 38365262
Alignment:
| Q |
1 |
ccattaggttgagattaatggagatgcattatcattatcagtgtaaattaattttgaataaactatctatttagtctaag-ttatcactctttcttctat |
99 |
Q |
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| T |
38365674 |
ccattaggttgagattaatggagaagcattatcattatcagtgtaaattaattttgaataaactatctatttagtctaaggttatcactctttcttctat |
38365575 |
T |
|
| Q |
100 |
ttaacttctaaatcatataaatataataaagtatatgaaatccgtcaatttaatctcgaaaaaattgagtatctgccaacttaatcgttaacatcataat |
199 |
Q |
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| T |
38365574 |
ttaacttctaaatcatataaatataataaagtatatgaaatccgtcaatttagtctcgaaaaaattgagtatctgccaacttaattgttaacataataat |
38365475 |
T |
|
| Q |
200 |
aataattccatactactttgggacgtagattttagattgaatattataggatgctaaatttccacgttagtggtaggtattgtgatatactctttggatt |
299 |
Q |
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| T |
38365474 |
agt--------------ttgtgacgtagattttagattgaatattataggatgctaaatttccacgttagtggtaggtattgtgata--ctctttggatt |
38365391 |
T |
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| Q |
300 |
atttaattggcttatgtccacaaacactttctatagtttgtacttttacacgccaattttctatccatatcaatgatatcatattatcatgtcactataa |
399 |
Q |
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| T |
38365390 |
atttaactggcttatgtccaaaaacactttctatagtttgtacttttacacgccaattttctatccatatcaatgatatcatattatcatgtcactataa |
38365291 |
T |
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| Q |
400 |
taataattagaaaagagaaaagaagagca |
428 |
Q |
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| T |
38365290 |
taataattagaaaagagaaaagaagagca |
38365262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 151
Target Start/End: Original strand, 38229313 - 38229350
Alignment:
| Q |
114 |
atataaatataataaagtatatgaaatccgtcaattta |
151 |
Q |
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| T |
38229313 |
atataaatataataaactatatgaaatccgtcaattta |
38229350 |
T |
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