View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8438_low_11 (Length: 426)
Name: NF8438_low_11
Description: NF8438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8438_low_11 |
 | |
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| [»] scaffold0640 (1 HSPs) |
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| [»] scaffold0271 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Original strand, 1041960 - 1042356
Alignment:
| Q |
18 |
atctgagaagttggaagaacttaaagggcgtcgtggggatgaaatggaagcaagttttcaacaaaaaatgaatgagcttacttttaaggctcaataacac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
1041960 |
atctgagaagttggaagaacttaaagggcgtcgtggggatgaaatggaagcaagttttcaacaaaaaatgaatgagcttacttttacagctcaagaacac |
1042059 |
T |
|
| Q |
118 |
ggacggaaaggaaatgaggcacaagaataatttcaggatttcgataagggtgaaacgaataagaaaaactggtggaagcgctttgtaaaaatcaggaaag |
217 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1042060 |
ggacggaaaggaaatgaggcacaagaagaatttcaggatttcgataagggtgaaacgaataagaaaaactggtggaagcgctttgtaaaaatcaggaaag |
1042159 |
T |
|
| Q |
218 |
atatgaagttcgcgagattgttgtaataatagaataagatgcttttcaatattgcaatgtattttcctatccgataaactgtgagctttgaccattttct |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1042160 |
atatgaagttcgcgagattgttgtaataatagaataagatgcttttcaatattgcaatgtattttcctatccgataaactgtgagctttgaccattttct |
1042259 |
T |
|
| Q |
318 |
gttgaatcggaggggcgtattttgtttgaaagtcaaaccagtgttgattgttggactgctgcaggtttgatttcaacccttcaaccgcgaatgtctc |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1042260 |
gttgaatcggaggggcgtattttgtttgaaagtcaaaccagtgttgattgttggactgctgcaggtttgatttcaacccttcaaccgcgaatgtctc |
1042356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Original strand, 41193025 - 41193421
Alignment:
| Q |
18 |
atctgagaagttggaagaacttaaagggcgtcgtggggatgaaatggaagcaagttttcaacaaaaaatgaatgagcttacttttaaggctcaataacac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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|
| T |
41193025 |
atctgagaagttggaagaacttaaagggcgtcgtggggatgaaatggaagcaagttttcaacaaaaaatgaatgagcttacttttacagctcaagaacac |
41193124 |
T |
|
| Q |
118 |
ggacggaaaggaaatgaggcacaagaataatttcaggatttcgataagggtgaaacgaataagaaaaactggtggaagcgctttgtaaaaatcaggaaag |
217 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41193125 |
ggacggaaaggaaatgaggcacaagaagaatttcaggatttcgataagggtgaaacgaataagaaaaactggtggaagcgctttgtaaaaatcaggaaag |
41193224 |
T |
|
| Q |
218 |
atatgaagttcgcgagattgttgtaataatagaataagatgcttttcaatattgcaatgtattttcctatccgataaactgtgagctttgaccattttct |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41193225 |
atatgaagttcgcgagattgttgtaataatagaataagatgcttttcaatattgcaatgtattttcctatccgataaactgtgagctttgaccattttct |
41193324 |
T |
|
| Q |
318 |
gttgaatcggaggggcgtattttgtttgaaagtcaaaccagtgttgattgttggactgctgcaggtttgatttcaacccttcaaccgcgaatgtctc |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| |
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|
| T |
41193325 |
gttgaatcggaggggcgtattttgtttgaaagtcaaaccagtgttgattgttggattggtgcaggtttgatttcaacccttcaaccgcgaatatctc |
41193421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Original strand, 41200281 - 41200677
Alignment:
| Q |
18 |
atctgagaagttggaagaacttaaagggcgtcgtggggatgaaatggaagcaagttttcaacaaaaaatgaatgagcttacttttaaggctcaataacac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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|
| T |
41200281 |
atctgagaagttggaagaacttaaagggcgtcgtggggatgaaatggaagcaagttttcaacaaaaaatgaatgagcttacttttacagctcaagaacac |
41200380 |
T |
|
| Q |
118 |
ggacggaaaggaaatgaggcacaagaataatttcaggatttcgataagggtgaaacgaataagaaaaactggtggaagcgctttgtaaaaatcaggaaag |
217 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41200381 |
ggacggaaaggaaatgaggcacaagaagaatttcaggatttcgataagggtgaaacgaataagaaaaactggtggaagcgctttgtaaaaatcaggaaag |
41200480 |
T |
|
| Q |
218 |
atatgaagttcgcgagattgttgtaataatagaataagatgcttttcaatattgcaatgtattttcctatccgataaactgtgagctttgaccattttct |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41200481 |
atatgaagttcgcgagattgttgtaataatagaataagatgcttttcaatattgcaatgtattttcctatccgataaactgtgagctttgaccattttct |
41200580 |
T |
|
| Q |
318 |
gttgaatcggaggggcgtattttgtttgaaagtcaaaccagtgttgattgttggactgctgcaggtttgatttcaacccttcaaccgcgaatgtctc |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| |
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|
| T |
41200581 |
gttgaatcggaggggcgtattttgtttgaaagtcaaaccagtgttgattgttggattggtgcaggtttgatttcaacccttcaaccgcgaatatctc |
41200677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 234 - 414
Target Start/End: Original strand, 41408355 - 41408535
Alignment:
| Q |
234 |
attgttgtaataatagaataagatgcttttcaatattgcaatgtattttcctatccgataaactgtgagctttgaccattttctgttgaatcggaggggc |
333 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||| ||||||| |
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|
| T |
41408355 |
attgttgtaataatgcaataagatgctcttcaatattgcaatgtattttcctgtccgataaactgcgagctttgcgcattttctgttgaatccgaggggc |
41408454 |
T |
|
| Q |
334 |
gtattttgtttgaaagtcaaaccagtgttgattgttggactgctgcaggtttgatttcaacccttcaaccgcgaatgtctc |
414 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||| || |||||||| |
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|
| T |
41408455 |
atattttgtttgaaagtcaaaccgctgttgattgttggactactgcaggtttgatttcatcccttcaacagcaaatgtctc |
41408535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Original strand, 33323551 - 33323947
Alignment:
| Q |
18 |
atctgagaagttggaagaacttaaagggcgtcgtggggatgaaatggaagcaagttttcaacaaaaaatgaatgagcttacttttaaggctcaataacac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
33323551 |
atctgagaagttggaagaacttaaagggcgtcgtggggatgaaatggaagcaagttttcaacaaaaaatgaatgagcttacttttacagctcaagaacac |
33323650 |
T |
|
| Q |
118 |
ggacggaaaggaaatgaggcacaagaataatttcaggatttcgataagggtgaaacgaataagaaaaactggtggaagcgctttgtaaaaatcaggaaag |
217 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33323651 |
ggacggaaaggaaatgaggcacaagaagaatttcaggatttcgataagggtgaaacgaataagaaaaactggtggaagcgctttgtaaaaatcaggaaag |
33323750 |
T |
|
| Q |
218 |
atatgaagttcgcgagattgttgtaataatagaataagatgcttttcaatattgcaatgtattttcctatccgataaactgtgagctttgaccattttct |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33323751 |
atatgaagttcgcgagattgttgtaataatagaataagatgcttttcaatattgcaatgtattttcctatccgataaactgtgagctttgaccattttct |
33323850 |
T |
|
| Q |
318 |
gttgaatcggaggggcgtattttgtttgaaagtcaaaccagtgttgattgttggactgctgcaggtttgatttcaacccttcaaccgcgaatgtctc |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33323851 |
gttgaatcggaggggcgtattttgtttgaaagtcaaaccagtgttgattgttggaatgatgcaggtttgatttcaacccttcaaccgcgaatatctc |
33323947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 214 - 402
Target Start/End: Complemental strand, 2632 - 2443
Alignment:
| Q |
214 |
aaagatatgaagttcgc-gagattgttgtaataatagaataagatgcttttcaatattgcaatgtattttcctatccgataaactgtgagctttgaccat |
312 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
2632 |
aaagatatgaagttcaccgagattgttgtaataatgcaataagatgctcttcaaaattgcaatgtattttcctgtccgataaactgtgagctttgcgcat |
2533 |
T |
|
| Q |
313 |
tttctgttgaatcggaggggcgtattttgtttgaaagtcaaaccagtgttgattgttggactgctgcaggtttgatttcaacccttcaac |
402 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2532 |
tttctgttgaatccaaggggcatattttgtttgaaagtcaaaccactgttgattgttggactactgcaggtttgatttcaacccttcaac |
2443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 121; Significance: 7e-62; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 234 - 414
Target Start/End: Complemental strand, 23100 - 22920
Alignment:
| Q |
234 |
attgttgtaataatagaataagatgcttttcaatattgcaatgtattttcctatccgataaactgtgagctttgaccattttctgttgaatcggaggggc |
333 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||| ||||||| |
|
|
| T |
23100 |
attgttgtaataatgcaataagatgctcttcaatattgcaatgtattttcctgtccgataaactgcgagctttgcgcattttctgttgaatccgaggggc |
23001 |
T |
|
| Q |
334 |
gtattttgtttgaaagtcaaaccagtgttgattgttggactgctgcaggtttgatttcaacccttcaaccgcgaatgtctc |
414 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||| || |||||||| |
|
|
| T |
23000 |
atattttgtttgaaagtcaaaccgctgttgattgttggactactgcaggtttgatttcatcccttcaacagcaaatgtctc |
22920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 217
Target Start/End: Original strand, 38951714 - 38951799
Alignment:
| Q |
132 |
tgaggcacaagaataatttcaggatttcgataagggtgaaacgaataagaaaaactggtggaagcgctttgtaaaaatcaggaaag |
217 |
Q |
| |
|
||||||| ||||| ||||| |||||||||||| ||| || | |||| ||||||||||| |||||| ||||| || |||||||||| |
|
|
| T |
38951714 |
tgaggcaaaagaagaattttgggatttcgataatggtaaagctaataggaaaaactggttgaagcgttttgtgaacatcaggaaag |
38951799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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