View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8438_low_12 (Length: 425)
Name: NF8438_low_12
Description: NF8438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8438_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 10 - 405
Target Start/End: Original strand, 40482966 - 40483359
Alignment:
| Q |
10 |
gtgagaagaagaacggaattaagcatcgtcac----------atgcattgctgctagttgaaaaggcaaaccgaagtagtatataaataagcataaggaa |
99 |
Q |
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| T |
40482966 |
gtgagaagaagaacggaattaagcatcgtcacgtcacgtcacatgcattgctc---gttgaaaaggcaaaccgaagtagtatata--------taaggaa |
40483054 |
T |
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| Q |
100 |
tggtaaagaatcaaaatagaaataacgacaagtacaaaaagtatggaaaaacacaatcttacacaccaaacctaactaactactattataagtttataac |
199 |
Q |
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| T |
40483055 |
tggtcaagaatcaagatagaaataacgacaagtacaaagagtatggaaaaacacaatcttacacaccaaacctaacta----ctattataagtttataac |
40483150 |
T |
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| Q |
200 |
taaactagccaccaatgctcttatcatagagagta---gggacatagaccctcttgttatttccaattcacactaaaatgtctttctttgcccccacgtg |
296 |
Q |
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|||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40483151 |
taaactagccaccaatgctcttatcatatagagtagtagggacatggaccctcttgttatttccaattcacactaaaatgtctttctttacccccacgtg |
40483250 |
T |
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| Q |
297 |
caacacaccatagaacagtgaaccactgaataccacagttaatgttccatactcaaagccaaacaaacatcacactaacagatacaaaagaaaatctttt |
396 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40483251 |
caacacaccatagaacagcgaaccactgaataccacagttaatgttccatactcaaagccaaacaaacatcacactaacagatacaaaaaaaaatctttt |
40483350 |
T |
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