View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8438_low_14 (Length: 406)
Name: NF8438_low_14
Description: NF8438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8438_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 30 - 339
Target Start/End: Original strand, 23694836 - 23695145
Alignment:
| Q |
30 |
ccattgctaaggatatgggcatcacagatatggttgtttactcggattctctcctttctattgatcttatttctggcagcttctccaagttccatgttca |
129 |
Q |
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| T |
23694836 |
ccattcctaaggatatgggcatcacagatatggctgtttactcggactctctcctttctattgattttatttcatgcagcttctccaagttcgacgttca |
23694935 |
T |
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| Q |
130 |
tgttgtccttattcaagacatcatagacttgctttccacggtgaattattctctcaaccacactctctgcgagggcaataaatgcgccggttattttgct |
229 |
Q |
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| T |
23694936 |
ttttgtccttattaaagacatcatagacttgctttacacattgaattattctctcaaccacactctctgcgagggaaataagtgcgccgattattttgct |
23695035 |
T |
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| Q |
230 |
aaactaggagccaacacagatgtcagtcttctgatccacactctgcctcctgatgacctcagctattgtttgaaggacgacgcttccggaactttgtacc |
329 |
Q |
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| T |
23695036 |
aaactaagagccagcacagatgtcagttttctgatccagactctgcctcctgatgacctccgctcttgtttgaaggacgacgcttccgggactttgtacc |
23695135 |
T |
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| Q |
330 |
tgagagccta |
339 |
Q |
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||||| |||| |
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| T |
23695136 |
tgagaaccta |
23695145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 245 - 339
Target Start/End: Original strand, 23690054 - 23690148
Alignment:
| Q |
245 |
acagatgtcagtcttctgatccacactctgcctcctgatgacctcagctattgtttgaaggacgacgcttccggaactttgtacctgagagccta |
339 |
Q |
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| T |
23690054 |
acagatgtcagtcttctgatccacactctgcctcctaatgacctccgctcttgtttgaaggacgacgcttccgggactttgtacctgagagccta |
23690148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 336
Target Start/End: Original strand, 30071797 - 30071943
Alignment:
| Q |
190 |
cactctctgcgagggcaataaatgcgccggttattttgctaaactaggagccaacacagatgtcagtcttctgatccacactctgcctcctgatgacctc |
289 |
Q |
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||||||| | ||||| ||| | ||||||| ||||||||| ||||||||||||| | |||||| ||||| |||| || ||||||||||| ||||| || |
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| T |
30071797 |
cactctccgtgagggtaatcagtgcgccgattattttgcaaaactaggagccagctcagatgatggtcttttgattcaaactctgcctcccgatgatctt |
30071896 |
T |
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| Q |
290 |
agctattgtttgaaggacgacgcttccggaactttgtacctgagagc |
336 |
Q |
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| T |
30071897 |
cgccctttcttgaagaatgacgttttcgaaactttgtacctgagagc |
30071943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 179448 - 179500
Alignment:
| Q |
44 |
atgggcatcacagatatggttgtttactcggattctctcctttctattgatct |
96 |
Q |
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||||||||||||||||||| ||||| || |||||||||||||| ||| |||| |
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| T |
179448 |
atgggcatcacagatatggcggtttattcagattctctcctttcaattaatct |
179500 |
T |
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