View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8438_low_16 (Length: 395)

Name: NF8438_low_16
Description: NF8438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8438_low_16
NF8438_low_16
[»] chr5 (11 HSPs)
chr5 (20-353)||(33003542-33003866)
chr5 (61-353)||(33015123-33015406)
chr5 (248-353)||(33015466-33015571)
chr5 (248-353)||(33003926-33004031)
chr5 (248-350)||(33015631-33015733)
chr5 (248-350)||(33004091-33004193)
chr5 (269-343)||(33015844-33015918)
chr5 (269-343)||(33004304-33004378)
chr5 (20-79)||(33015115-33015174)
chr5 (248-306)||(33004256-33004314)
chr5 (248-306)||(33015796-33015854)


Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 20 - 353
Target Start/End: Original strand, 33003542 - 33003866
Alignment:
Q  20 gttgtaggaggtggcggtgaacttggtgttgtcggtgctgcaggtgggggtggacttggtgttgtaggtgctgcaggtggaggtggagttggtactaatg 119  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  33003542 gttgtaggaggtggaggtgaacttggtgtggtcggtgctgcaggtggaggtggacttggtgttgtaggtgttgcaggtggaggtggacttggtactaatg 33003641  T
Q  120 gagctgcaggagttacaggtggaggtagacttggaactaatggaggtggaggagttagaagtggacttggtattaatggtggacttggtattaatggagt 219  Q
    |||||||||||||||||||||||||| |||||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||         
T  33003642 gagctgcaggagttacaggtggaggtggacttggaactaatggaactggaggaattagaactggacttggtattaatggtggacttggtattaat----- 33003736  T
Q  220 tagaggagttagaggtggatttgttgtgccgggccatcctggaatgccgggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtata 319  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33003737 ----ggagttagaggtggatttgttgtgccgggccatcctggaatgccgggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtata 33003832  T
Q  320 ttgaagcaatctgttcttgcatcaccattcttct 353  Q
    ||||||||||||||||||||||||||||||||||    
T  33003833 ttgaagcaatctgttcttgcatcaccattcttct 33003866  T

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Target: chr5; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 61 - 353
Target Start/End: Original strand, 33015123 - 33015406
Alignment:
Q  61 aggtgggggtggacttggtgttgtaggtgctgcaggtggaggtggagttggtactaatggagctgcaggagttacaggtggaggtagacttggaactaat 160  Q
    |||||| |||| |||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33015123 aggtggaggtgaacttggtgttgtcggtgttgcaggtggaggtggacttggtactaatggagctgcaggagttacaggtggaggtggacttggaactaat 33015222  T
Q  161 ggaggtggaggagttagaagtggacttggtattaatggtggacttggtattaatggagttagaggagttagaggtggatttgttgtgccgggccatcctg 260  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||    
T  33015223 ggagctggaggagttagaagtggacttggtattaatggtggacttggtattaat---------ggagttagaggtggatttgttgtgccgggccatcctg 33015313  T
Q  261 gaatgccgggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgttcttgcatcaccattcttct 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33015314 gaatgccgggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgttcttgcatcaccattcttct 33015406  T

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Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 248 - 353
Target Start/End: Original strand, 33015466 - 33015571
Alignment:
Q  248 ccgggccatcctggaatgccgggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgttcttgcatcaccat 347  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||    
T  33015466 ccgggccatcctggaatgcctggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgtacttgcatcgtcat 33015565  T
Q  348 tcttct 353  Q
    ||||||    
T  33015566 tcttct 33015571  T

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Target: chr5; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 248 - 353
Target Start/End: Original strand, 33003926 - 33004031
Alignment:
Q  248 ccgggccatcctggaatgccgggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgttcttgcatcaccat 347  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||    
T  33003926 ccgggccatcctggaatgcctggaataccgggccaagttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgtacttgcatcgtcat 33004025  T
Q  348 tcttct 353  Q
    ||||||    
T  33004026 tcttct 33004031  T

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Target: chr5; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 248 - 350
Target Start/End: Original strand, 33015631 - 33015733
Alignment:
Q  248 ccgggccatcctggaatgccgggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgttcttgcatcaccat 347  Q
    ||||||||||| |||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  33015631 ccgggccatccaggaatgcccgaaataccaggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgtacttgcatcgccat 33015730  T
Q  348 tct 350  Q
    |||    
T  33015731 tct 33015733  T

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Target: chr5; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 248 - 350
Target Start/End: Original strand, 33004091 - 33004193
Alignment:
Q  248 ccgggccatcctggaatgccgggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgttcttgcatcaccat 347  Q
    ||||||||||| |||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||    
T  33004091 ccgggccatccaggaatgcccgaaataccaggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgtacttggatcgccat 33004190  T
Q  348 tct 350  Q
    |||    
T  33004191 tct 33004193  T

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Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 269 - 343
Target Start/End: Original strand, 33015844 - 33015918
Alignment:
Q  269 ggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgttcttgcatca 343  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |  |||||||||    
T  33015844 ggaataccgggccatgttggtaggcctggaacaccgggaagtccaggtatattgaaacaatccgaacttgcatca 33015918  T

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Target: chr5; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 269 - 343
Target Start/End: Original strand, 33004304 - 33004378
Alignment:
Q  269 ggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgttcttgcatca 343  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||| |  |||||||||    
T  33004304 ggaataccgggccatgtcggtaggcctggaacaccgggaagtccaggtatattgaaacaatccgaacttgcatca 33004378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 33015115 - 33015174
Alignment:
Q  20 gttgtaggaggtggcggtgaacttggtgttgtcggtgctgcaggtgggggtggacttggt 79  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||    
T  33015115 gttgtaggaggtggaggtgaacttggtgttgtcggtgttgcaggtggaggtggacttggt 33015174  T

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Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 248 - 306
Target Start/End: Original strand, 33004256 - 33004314
Alignment:
Q  248 ccgggccatcctggaatgccgggaataccgggccatgttggtaggcctggaacaccggg 306  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||    
T  33004256 ccgggccatcctggaatgcctggaataccgggccatgtcggtaggcctggaataccggg 33004314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 248 - 306
Target Start/End: Original strand, 33015796 - 33015854
Alignment:
Q  248 ccgggccatcctggaatgccgggaataccgggccatgttggtaggcctggaacaccggg 306  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||    
T  33015796 ccgggccatcctggaatgcctggaataccgggccatgtcggtaggcctggaataccggg 33015854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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