View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8438_low_19 (Length: 371)
Name: NF8438_low_19
Description: NF8438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8438_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 17 - 354
Target Start/End: Original strand, 37306543 - 37306881
Alignment:
| Q |
17 |
ccagaaacccattatataccattcagaaacaagcacttgattcattctaaaaccatcatctcctttcaaattcaatagctttttcaagaaatacatgtcc |
116 |
Q |
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| T |
37306543 |
ccagaaacccattatataccattcagaaacaagcacttcattcattctaaaaccatcatcgcctttcaaattcaatagctttttcaagaaatacatgtcc |
37306642 |
T |
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| Q |
117 |
ctggactgaacnnnnnnncaataaacataagcaagcaagcataatgaagtgaaagatgaaaaaagaagatagtata-----tgtaaccggagtctggttt |
211 |
Q |
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| T |
37306643 |
ctcgactacaaaataaataaataaacataagcaagca----tagtgcattgaaagaagaaaaaacaagatagtatagtatatattaccggagtctggttt |
37306738 |
T |
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| Q |
212 |
ggggaaagaaaagaaacatagtagataagtgcagcccataagagaaagagtaaaattgaggttgtccaatctcttttaacctcctccttctcctcaacac |
311 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37306739 |
ggggagagaaaagaaacatagtagataagtgcagcccataagagaaagagtaaaattgaggttgtccaatctcttttaacctcctccttctcctcaacac |
37306838 |
T |
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| Q |
312 |
tgctactctgtttgttggaatcattgcaaatcacaatactact |
354 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37306839 |
tgctattctgtttgttggaatcattgcaaatcacaatactact |
37306881 |
T |
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