View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8438_low_21 (Length: 341)
Name: NF8438_low_21
Description: NF8438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8438_low_21 |
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| [»] scaffold0209 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 20 - 330
Target Start/End: Original strand, 14417116 - 14417445
Alignment:
| Q |
20 |
tttgtcgactgaaatgaatctctgaccatccctctagaagagttcatctcccgtgaacttgcagcaacca-------------------taagtgcnnnn |
100 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||| |
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| T |
14417116 |
tttgtcaactgcaatgaatctctgaccatccctctagaagagctcatctcccctgaacttgcagcaaccataagtgcaagctatgcacataagtgcaaaa |
14417215 |
T |
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| Q |
101 |
nnnttgaatgctttgtggtaatgctcgtcattcaccattctttgcaagtgaattgtcatagctacaaacactccatagtcaagaactcaattcccatcaa |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14417216 |
aacttgaatgctttgcggtaatgctcgtcattcaccattctttgcaagtgaattgtcatagctacaaacactccatagtcaagaactcaattcccatcaa |
14417315 |
T |
|
| Q |
201 |
catcggtctaagcaattgacaacnnnnnnnnntcctcaaatcataaagtttattattgcatccactcatacactagacacagggcatgaatggcaaatca |
300 |
Q |
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|||| |||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
14417316 |
catccgtctaagcaattgacaacaaaaaaaaattctcaaatcacaaagtttattattgcatccactcatacactagacacagggcatgaatagcaaatca |
14417415 |
T |
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| Q |
301 |
agtgatgaaggaggtgaagaatggaatgat |
330 |
Q |
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| T |
14417416 |
agtgatgaaggaggtgaagaatggaatgat |
14417445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 96
Target Start/End: Complemental strand, 30654822 - 30654775
Alignment:
| Q |
49 |
ccctctagaagagttcatctcccgtgaacttgcagcaaccataagtgc |
96 |
Q |
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| T |
30654822 |
ccctctagaaaagctcatctcccctgagcttgcagcaaccataagtgc |
30654775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 104 - 298
Target Start/End: Complemental strand, 44512779 - 44512582
Alignment:
| Q |
104 |
ttgaatgctttgtggtaatgctcgtcattcaccattctttgcaagtgaattgtcatagctacaaacactccatagtcaagaactcaattcccatcaacat |
203 |
Q |
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||||||||||| || |||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
44512779 |
ttgaatgctttacggaaatgctcgtcattctccattctttgcaagtgaattgtcacagctacaaactctccatagtcaagaactccattcccatcaacat |
44512680 |
T |
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| Q |
204 |
cggtctaagcaattga---caacnnnnnnnnntcctcaaatcataaagtttattattgcatccactcatacactagacacagggcatgaatggcaaat |
298 |
Q |
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| T |
44512679 |
cggcctaagcaattgacagcaaagaaaaaaaatcctcaaatcatagaacttattattgcacccactcatacacttgacacagggcatgaatggcaaat |
44512582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 165 - 326
Target Start/End: Original strand, 25035586 - 25035747
Alignment:
| Q |
165 |
caaacactccatagtcaagaactcaattcccatcaacatcggtctaagcaattgacaacnnnnnnnnn--tcctcaaatcataaagtttattattgcatc |
262 |
Q |
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|||||||||||||||||||||||| |||| |||||||||| |||||||||||||||| ||||||||||| | || ||||||||||||| |
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| T |
25035586 |
caaacactccatagtcaagaactccattcacatcaacatcaacctaagcaattgacaacaaggaaaaaaatcctcaaatcacagagcttattattgcatc |
25035685 |
T |
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| Q |
263 |
cactcatacactagacacagggcatgaatggcaaatcaagtgatgaaggaggtgaagaatggaa |
326 |
Q |
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| T |
25035686 |
cactcatacactagaca--gggcatgaatggcaaatcaagtgataaaggaggtgaagaatggaa |
25035747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 25035524 - 25035586
Alignment:
| Q |
34 |
tgaatctctgaccatccctctagaagagttcatctcccgtgaacttgcagcaaccataagtgc |
96 |
Q |
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|||||||||||||||||||||||||||| |||||| || ||||||||||||||||| |||||| |
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| T |
25035524 |
tgaatctctgaccatccctctagaagagctcatcttccttgaacttgcagcaaccacaagtgc |
25035586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 221
Target Start/End: Complemental strand, 7913097 - 7912996
Alignment:
| Q |
120 |
aatgctcgtcattcaccattctttgcaagtgaattgtcatagctacaaacactccatagtcaagaactcaattcccatcaacatcggtctaagcaattga |
219 |
Q |
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|||| ||||||||| ||||| |||||||||||||||||| |||||||||| ||||||| ||||||||| |||||||| ||||| | ||||| |||||| |
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| T |
7913097 |
aatggtcgtcattctccattttttgcaagtgaattgtcacagctacaaactctccataatcaagaactacattcccatgaacattagcctaagaaattga |
7912998 |
T |
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| Q |
220 |
ca |
221 |
Q |
| |
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|| |
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| T |
7912997 |
ca |
7912996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 7525 - 7464
Alignment:
| Q |
35 |
gaatctctgaccatccctctagaagagttcatctcccgtgaacttgcagcaaccataagtgc |
96 |
Q |
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||||||||||||| |||| ||||||| | |||||| |||||||||||||||||||||||| |
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| T |
7525 |
gaatctctgaccagccctagagaagagcacgtctcccttgaacttgcagcaaccataagtgc |
7464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 20979 - 20918
Alignment:
| Q |
35 |
gaatctctgaccatccctctagaagagttcatctcccgtgaacttgcagcaaccataagtgc |
96 |
Q |
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||||||||||||| |||| ||||||| | |||||| |||||||||||||||||||||||| |
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| T |
20979 |
gaatctctgaccagccctagagaagagcacgtctcccttgaacttgcagcaaccataagtgc |
20918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 8834257 - 8834318
Alignment:
| Q |
35 |
gaatctctgaccatccctctagaagagttcatctcccgtgaacttgcagcaaccataagtgc |
96 |
Q |
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||||||||||||| |||| | |||||| |||||||| | |||||||||||||||||||||| |
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| T |
8834257 |
gaatctctgaccagccctacaaaagagtgcatctcccctaaacttgcagcaaccataagtgc |
8834318 |
T |
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