View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8438_low_26 (Length: 309)
Name: NF8438_low_26
Description: NF8438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8438_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 2 - 270
Target Start/End: Original strand, 13959153 - 13959421
Alignment:
| Q |
2 |
aaaaaactcattcgaaggataaacataattgttcaaaatcataaataaatacattacatttctttgcatataaagtgtgtgagttttgccatcaaactct |
101 |
Q |
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| T |
13959153 |
aaaaaactcattcgaaggataaacataattgttcaaaatcataaataaatacattacatttctttgcatatagagtgtgtgagttttgccatcaaactct |
13959252 |
T |
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| Q |
102 |
ttaaaataaataaataaaacctcacatttctttaagttcaaagaagaacaagcaatgttcttcataggtcttatgcatgaattgtttcactcatatcatt |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
13959253 |
ttaaaataaataaataaaacctcacatttctttaagttcaaagaagaacaagcaatgttcttcataggtcttatgcatgaattgtttcactcatataatt |
13959352 |
T |
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| Q |
202 |
aggtagaaaaagaagnnnnnnnntgaacagaaattcacaattattgggaataacgcaagtctcacatcg |
270 |
Q |
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| T |
13959353 |
aagtagaaaaagaagaaaaaaaatgaacagaaattcacaattattgggaataacgcaagtctcacatcg |
13959421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 4 - 270
Target Start/End: Complemental strand, 4029999 - 4029729
Alignment:
| Q |
4 |
aaaactcattcgaaggataaacataattgttcaaaatcataaataaatacattacatttctttgcatataaagtgtgtgagttttgccatcaaactcttt |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4029999 |
aaaactcattcgaaggataaacataattgttcaaaatcataaataaatacattacatttctttgcatatagagtgtgtgagttttgccatcaaactcttt |
4029900 |
T |
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| Q |
104 |
aaaataaataaataaaacctcacatttcttt--------aagttcaaagaagaacaagcaatgttcttcataggtcttatgcatgaattgtttcactcat |
195 |
Q |
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|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4029899 |
aaaataaa----taaaacctcacatttctttagattataaagttcaaagaagaacaagcaatgttcttcataggtcttatgcatgaattgtttcactcat |
4029804 |
T |
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| Q |
196 |
atcattaggtagaaaaagaagnnnnnnnntgaacagaaattcacaattattgggaataacgcaagtctcacatcg |
270 |
Q |
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|| |||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
4029803 |
ataattaagtagaaaaagaagaaaaaaaatgaacagaaattcacaattattgggaataatgcaagtcccacatcg |
4029729 |
T |
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