View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8438_low_29 (Length: 293)
Name: NF8438_low_29
Description: NF8438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8438_low_29 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 13560096 - 13559890
Alignment:
| Q |
17 |
aaattcctgccaaattattaggaaaaaactagtcgttcttatgatgttcgatcctgaaattgtcaaatgaaattcaatcttgaaattgaagagacagtaa |
116 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13560096 |
aaattcctgccaaattattaggataaaactagttgttcttatgatgttcgatcctgaaattgtcaaatgaaattcaatcttgaaattgaagagacagtaa |
13559997 |
T |
|
| Q |
117 |
gagctaatagaacagctgtttcgttggcgcaaatagtagaaagggagagaatcttgtgatgtt-ttttacgtagtggtcagggttcgatccagaaccttg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||| |
|
|
| T |
13559996 |
gagctaatagaacagctgtttcgttggcgcaaatagtagaaagggagagaatcttgtgatgtttttttatgtggtggtcagggttcgatccagaacctta |
13559897 |
T |
|
| Q |
216 |
tatatat |
222 |
Q |
| |
|
||||||| |
|
|
| T |
13559896 |
tatatat |
13559890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 13558471 - 13558408
Alignment:
| Q |
21 |
tcctgccaaattattaggaaaaaactagtcgttcttatgatgttcgatcctgaaattgtcaaatg |
85 |
Q |
| |
|
||||||||||||||| |||||||| |||| |||||||||| |||||||| ||||| ||||||||| |
|
|
| T |
13558471 |
tcctgccaaattatttggaaaaaa-tagttgttcttatgaggttcgatcttgaaactgtcaaatg |
13558408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 13559862 - 13559822
Alignment:
| Q |
243 |
tttaagcttacgactgtgacgtttgatatcaagaataatgt |
283 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||| ||||| |
|
|
| T |
13559862 |
tttaagcttacgtctgtgatgtttgatatcaagaacaatgt |
13559822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University