View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8438_low_3 (Length: 581)
Name: NF8438_low_3
Description: NF8438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8438_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 15 - 547
Target Start/End: Complemental strand, 36084430 - 36083898
Alignment:
| Q |
15 |
caaaaagatcatatgatcagcaacaacaactacagattgtgcaacatgtgaagaattcaggaatgattaacaacatccagagtccaagaagagatgaaaa |
114 |
Q |
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| T |
36084430 |
caaaaagatcatatgatcagcaacaacaactacagattgtgcaacatgtgaagaattcaggaatgattaacaacatccagagtccaagaagagatgaaaa |
36084331 |
T |
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| Q |
115 |
ggaagaggaaatgtcaagatcagttctagcaatgtttagagaaaaggaagaagaaattgagagaagaaagttggaggttagagataaggttcatgctcat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36084330 |
ggaagaggaaatgtcaagatcagttctagcaatgtttagagaaaaggaagaagaaattgagagaagaaagttggaggttagagataaggttcatgctcat |
36084231 |
T |
|
| Q |
215 |
ctcggtcgagtcgaaaaggaaacaaagcgattggctgagataagagaagtaagtccaataaacaaacactgaatttgagctagattgtttataatgttcc |
314 |
Q |
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| T |
36084230 |
ctcggtcgagtcgaaaaggaaacaaagcgattggctgagataagagaagtaagtccaataaacaaacactgaatttgagctagattgtttataatgttcc |
36084131 |
T |
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| Q |
315 |
attgtttgtttggtttttatgcatttataaatctttgtgcaaagtttcaaaatcatggtcgcggccacgcagtaatctttgatattgtagaaaatcacgg |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||| |
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| T |
36084130 |
attgtttgtttggtttttatgcatttataaatctttgtgcaaagtttcaaaatcatggtcgcggccacgcattaatatttgatattgtagaaaattgcgg |
36084031 |
T |
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| Q |
415 |
ataaatacaacttgtgtttccgcaatagcgatcacaatttgatgtccgtgacaatataacgttgaaaacgctgctatattttccgttgcagaccgttttt |
514 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| | | ||||||||| |||||||||||| ||||| |
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| T |
36084030 |
ataaatacaacttgtgtttccgcgatagcgatcacaatttgatgttggtgacaatataacgttgaaatcacggctatatttgccgttgcagaccattttt |
36083931 |
T |
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| Q |
515 |
taaaaccttgaccaagatttaaggattagcttt |
547 |
Q |
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| T |
36083930 |
taaaaccttgaccaagatttaaggactagcttt |
36083898 |
T |
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